Gene: AT1G47830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G47830
  • Transcript Identifier AT1G47830.1
  • Gene Type Coding gene
  • Location Chr1 : 17613346-17614784 : negative

Gene Family Information

  • ID HOM05D000849
  • #Genes/#Species 704/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G47830.1
  • uniprot Q84WL9

Descriptions

  • Description SNARE-like superfamily protein
  • Computational description SNARE-like superfamily protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, protein transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complex small chain family protein (TAIR:AT4G35410.2); Has 1794 Blast hits to 1793 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 421; Plants - 260; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0072583
IEA
Gene Ontologyclathrin-dependent endocytosis
GO:0072583
IEA
InterProclathrin-dependent endocytosis
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IBA
Gene Ontologyvesicle-mediated transport1
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0015031
IEA
InterProprotein transport
GO:0006897
IEA
GOA Databaseendocytosis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035615
IEA
Gene Ontologyclathrin adaptor activity
GO:0035615
IEA
InterProclathrin adaptor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005905
IEA
GOA Databaseclathrin-coated pit
GO:0030122
IEA
Gene OntologyAP-2 adaptor complex
GO:0030122
IEA
InterProAP-2 adaptor complex
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle1
GO:0005634
HDA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022775 AP complex, mu/sigma subunit
IPR011012 Longin-like domain superfamily
IPR016635 Adaptor protein complex, sigma subunit
IPR027156 AP-2 complex subunit sigma
Mapman id Description
22.3.1.3.4 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.small subunit sigma (AP2S)