Gene: AT1G42440

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G42440
  • Transcript Identifier AT1G42440.1
  • Gene Type Coding gene
  • Location Chr1 : 15895528-15899939 : negative

Gene Family Information

  • ID HOM05D004428
  • #Genes/#Species 162/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G42440.1
  • uniprot Q9ASU6

Descriptions

  • Description pre-rRNA-processing TSR1-like protein
  • Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000462
IBA
Gene Ontologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000479
IBA
Gene Ontologyendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0042254
IEA
InterProribosome biogenesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034511
IBA
Gene OntologyU3 snoRNA binding1
GO:0003924
IBA
Gene OntologyGTPase activity1
GO:0005525
IBA
Gene OntologyGTP binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0030688
IBA
Gene Ontologypreribosome, small subunit precursor1
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012948 AARP2CN
IPR007034 Ribosome biogenesis protein BMS1/TSR1, C-terminal
IPR039761 Ribosome biogenesis protein Bms1/Tsr1
Mapman id Description
35.1 not assigned.annotated