Gene: AT1G25054

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G25054
  • Transcript Identifier AT1G25054.1
  • Gene Type Coding gene
  • Location Chr1 : 8804489-8806115 : positive

Gene Family Information

  • ID HOM05D006178
  • #Genes/#Species 128/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G25054.1
  • symbol LpxC3
  • Alias AtLpxC3
  • full_name lipid X C3
  • uniprot P0DKB8

Descriptions

  • Description UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
  • Computational description UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2001289
IMP
Gene Ontologylipid X metabolic process1
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0009245
IEA
GOA Databaselipid A biosynthetic process
GO:0009245
IEA
InterProlipid A biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0103117
IEA
Gene OntologyUDP-3-O-acyl-N-acetylglucosamine deacetylase activity
GO:0008759
IEA
GOA DatabaseUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
GO:0008759
IMP
Gene OntologyUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity1
GO:0008759
IEA
InterProUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
Gene Ontologymitochondrion1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal
IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal
Mapman id Description
5.6.2 Lipid metabolism.lipid A biosynthesis.UDP-3-O-acyl N-acetylglucosamine deacetylase (LpxC)