Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-188 662.5 327 100.0
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-188 662.5 327 100.0
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-188 662.5 327 100.0
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-188 662.5 327 100.0
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 4.3e-173 611.3 327 91.7
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 7.7e-170 600.5 330 89.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 6.5e-161 570.9 331 85.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.4e-158 563.1 329 84.8
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.5e-154 549.7 329 83.9
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.1e-151 539.3 332 81.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.0e-150 537.0 330 83.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.1e-149 533.5 362 76.8
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 7.4e-149 530.8 364 76.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.8e-148 528.9 364 76.4
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.2e-138 496.9 347 72.9
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.3e-132 476.9 304 77.0
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.0e-115 417.9 302 66.9
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 4.6e-114 415.2 298 67.8
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.0e-113 414.1 299 68.2
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.7e-113 413.3 304 66.4
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.6e-113 411.0 299 68.2
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 8.6e-113 411.0 302 66.2
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.9e-112 409.8 300 67.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 4.3e-112 408.7 303 65.3
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.6e-111 406.8 306 64.1
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 4.7e-111 405.2 290 66.9
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.7e-111 405.2 311 65.6
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.1e-110 404.1 303 62.7
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-110 404.1 311 65.3
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.4e-110 403.7 304 63.8
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.3e-110 402.9 303 65.3
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 4.0e-110 402.1 301 63.1
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 6.8e-110 401.4 304 63.5
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.0e-109 399.8 324 62.3
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.4e-109 399.1 304 63.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.4e-109 398.7 310 65.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.7e-108 395.6 299 64.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.1e-107 394.0 300 65.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.4e-107 393.7 286 65.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.9e-107 393.3 303 62.4
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.4e-107 392.9 298 63.4
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.4e-107 392.9 306 62.4
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.1e-107 392.1 303 62.4
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.1e-107 392.1 303 62.4
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 9.2e-107 391.0 298 61.7
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-106 390.2 303 62.0
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 7.8e-106 387.9 298 61.1
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 2.3e-105 386.3 323 59.1
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.3e-105 386.3 299 60.9
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.3e-105 386.3 299 61.2
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 3.9e-105 385.6 304 63.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 3.9e-105 385.6 307 63.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 5.1e-105 385.2 298 64.1
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 1.5e-104 383.6 303 59.4
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.9e-104 383.3 328 59.1
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.3e-104 382.1 303 60.4
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.8e-103 379.4 299 61.2
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.4e-102 377.1 299 59.9
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.5e-101 373.6 303 60.1
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.5e-101 373.6 303 60.1
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 9.9e-101 370.9 316 59.2
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 2.2e-100 369.8 289 62.6
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 8.3e-100 367.9 303 59.4
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.1e-99 367.5 286 61.5
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 2.4e-99 366.3 306 56.5
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 2.1e-98 363.2 303 58.4
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 6.0e-98 361.7 306 55.6
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 5.1e-97 358.6 304 56.6
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.9e-96 356.7 303 58.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.6e-95 352.4 301 57.5
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 5.2e-94 348.6 298 56.0
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 5.8e-93 345.1 310 55.5
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.4e-92 341.7 288 57.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.1e-91 340.9 319 53.9
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.9e-91 340.1 288 56.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.4e-91 339.7 385 47.8
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.6e-90 337.0 285 57.2
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 6.0e-90 335.1 287 57.5
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 6.9e-86 321.6 313 54.6
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 6.9e-86 321.6 310 53.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.6e-85 319.7 307 52.4
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.4e-83 312.0 241 63.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.1e-82 310.1 284 53.9
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 9.6e-80 301.2 241 60.6
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 8.1e-79 298.1 278 56.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.8e-78 297.0 207 67.6
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 6.9e-78 295.0 297 50.8
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.7e-76 290.4 238 61.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.9e-76 289.7 286 50.3
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 4.6e-74 282.3 216 63.4
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.0e-74 282.0 261 55.9
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 6.2e-71 271.9 276 50.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 5.1e-65 252.3 296 48.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.1e-64 251.1 311 46.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.1e-64 251.1 205 57.1
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 4.0e-62 242.7 244 49.6
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 6.9e-62 241.9 216 56.5
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.0e-61 240.4 231 51.5
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.3e-57 226.9 240 50.4
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.8e-55 219.2 186 58.6
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 6.3e-55 218.8 189 58.7
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.1e-54 216.5 206 53.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.1e-54 216.5 186 58.1
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.1e-54 216.5 185 57.8
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.3e-54 215.7 181 59.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.3e-54 215.7 206 53.4
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.2e-53 214.5 185 57.8
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 2.1e-50 203.8 138 79.7
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.1e-49 199.1 188 53.7
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.7e-49 198.7 157 61.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.4e-45 186.4 153 60.1
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.2e-44 183.7 283 40.3
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 5.5e-43 179.1 301 37.5
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-40 171.4 216 45.4
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.3e-40 169.9 105 73.3
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.4e-40 169.5 105 73.3
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.6e-37 160.2 103 66.0
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 9.4e-35 151.8 208 44.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.3e-33 147.1 102 67.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.1e-32 144.8 203 42.4
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-31 140.2 108 66.7
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 8.2e-31 138.7 270 33.3
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.1e-30 136.3 137 54.0
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-29 133.3 116 60.3
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.3e-25 120.6 288 31.9
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.8e-23 113.6 106 54.7
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.5e-19 101.3 62 69.4
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.6e-18 97.8 77 63.6
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.6e-18 97.8 77 63.6
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 2.1e-10 70.9 45 66.7
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-07 59.7 39 74.4
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.4e-06 58.2 122 36.9


User provided reference genes

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