Gene: AT1G20080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20080
  • Transcript Identifier AT1G20080.3
  • Gene Type Coding gene
  • Location Chr1 : 6962236-6964912 : positive

Gene Family Information

  • ID HOM05D000524
  • #Genes/#Species 1038/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20080.3
  • symbol SYTB
  • uniprot B6ETT4

Descriptions

  • Description Calcium-dependent lipid-binding (CaLB domain) family protein
  • Computational description SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4705; Fungi - 871; Plants - 1207; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009306
IMP
Gene Ontologyprotein secretion1
GO:0006869
IEA
GOA Databaselipid transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008289
IEA
GOA Databaselipid binding
GO:0008289
IEA
InterProlipid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISM
Gene Ontologyplasma membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
IDA
Gene OntologyGolgi apparatus1
GO:0005783
IBA
Gene Ontologyendoplasmic reticulum2
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000008 C2 domain
IPR039010 Synaptotagmin, SMP domain
IPR045050 Synaptotagmin, plant
IPR035892 C2 domain superfamily
Mapman id Description
5.8.1.2 Lipid metabolism.lipid trafficking.endoplasmic reticulum-plasma membrane lipid transfer.endoplasmic reticulum-plasma membrane tethering protein (SYTa/b/c)