Gene: AT1G17420
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G17420
- Transcript Identifier AT1G17420.1
- Gene Type Coding gene
- Location Chr1 : 5977512-5981384 : positive
Gene Family Information
- ID HOM05D000208
- #Genes/#Species 1933/98
- Phylogenetic origin
- ID ORTHO05D000130
- #Genes/#Species 1771/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G17420.1
- symbol LOX3
- Alias ATLOX3,Arabidopsis thaliana lipoxygenase 3
- uniprot Q9LNR3
Descriptions
- Description lipoxygenase 3
- Computational description lipoxygenase 3 (LOX3); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 529; Fungi - 49; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
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Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0034440 | IDA IBA | Gene Ontology | lipid oxidation | 1 2 |
GO:0006633 | IEA | GOA Database | fatty acid biosynthetic process | |
GO:0006631 | IEA | GOA Database | fatty acid metabolic process | |
GO:0006629 | IEA | GOA Database | lipid metabolic process | |
GO:0009611 | IEP TAS | Gene Ontology | response to wounding | 3 4 |
GO:0006952 | TAS | Gene Ontology | defense response | 3 |
GO:0009695 | TAS | Gene Ontology | jasmonic acid biosynthetic process | 5 |
GO:0080086 | IGI | Gene Ontology | stamen filament development | 6 |
GO:0048653 | IGI | Gene Ontology | anther development | 6 |
GO:0009901 | IGI | Gene Ontology | anther dehiscence | 6 |
GO:0009555 | IGI | Gene Ontology | pollen development | 6 |
GO:0009620 | IEP | Gene Ontology | response to fungus | 7 |
GO:0009753 | IEP | Gene Ontology | response to jasmonic acid | 8 |
GO:0009644 | IEP | Gene Ontology | response to high light intensity | 9 |
GO:0031408 | IEA | Gene Ontology | oxylipin biosynthetic process |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0046872 | IEA | GOA Database | metal ion binding | |
GO:0046872 | IEA | InterPro | metal ion binding | |
GO:0016702 | IEA | GOA Database | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
GO:0016702 | IBA | Gene Ontology | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 2 |
GO:0016702 | IEA | InterPro | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
GO:0005515 | IEA | InterPro | protein binding | |
GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
GO:0016491 | IEA | InterPro | oxidoreductase activity | |
GO:0051213 | IEA | GOA Database | dioxygenase activity | |
GO:0016165 | IEA | GOA Database | linoleate 13S-lipoxygenase activity | |
GO:0016165 | IDA | Gene Ontology | linoleate 13S-lipoxygenase activity | 10 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009536 | IEA | GOA Database | plastid | |
GO:0009507 | IEA | GOA Database | chloroplast | |
GO:0009507 | ISM | Gene Ontology | chloroplast |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR001246 | Lipoxygenase, plant |
IPR027433 | Lipoxygenase, domain 3 |
IPR001024 | PLAT/LH2 domain |
IPR036392 | PLAT/LH2 domain superfamily |
IPR036226 | Lipoxigenase, C-terminal domain superfamily |
IPR042057 | Plant lipoxygenase, PLAT/LH2 domain |
IPR000907 | Lipoxygenase |
IPR013819 | Lipoxygenase, C-terminal |
Mapman id | Description |
---|---|
11.7.1.2 | Phytohormone action.jasmonic acid.biosynthesis.13-lipoxygenase (LOX) |