Gene: AT1G12860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G12860
  • Transcript Identifier AT1G12860.1
  • Gene Type Coding gene
  • Location Chr1 : 4384758-4386392 : positive

Gene Family Information

  • ID HOM05D000884
  • #Genes/#Species 677/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G12860.1
  • symbol SCRM2
  • Alias ICE2,INDUCER OF CBF EXPRESSION 2
  • full_name SCREAM 2
  • uniprot Q9LPW3

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description SCREAM 2 (SCRM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0; Bacteria - 1; Metazoa - 48; Fungi - 52; Plants - 4003; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IBA
TAS
Gene Ontologyregulation of transcription, DNA-templated1 2
GO:0010444
IMP
Gene Ontologyguard mother cell differentiation3
GO:0050826
IMP
Gene Ontologyresponse to freezing4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
ISS, IBA
Gene OntologyDNA-binding transcription factor activity1 2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0043565
IBA
Gene Ontologysequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
26.4.3.4.1 External stimuli response.temperature.cold response.ICE-CBF cold acclimation transcriptional cascade.transcription factor (ICE1/2)