Gene: AT1G12800

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G12800
  • Transcript Identifier AT1G12800.1
  • Gene Type Coding gene
  • Location Chr1 : 4361778-4365189 : negative

Gene Family Information

  • ID HOM05D005566
  • #Genes/#Species 138/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G12800.1
  • uniprot Q94AJ9

Descriptions

  • Description Nucleic acid-binding, OB-fold-like protein
  • Computational description Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT3G23700.1); Has 17110 Blast hits to 8844 proteins in 2496 species: Archae - 8; Bacteria - 12066; Metazoa - 261; Fungi - 174; Plants - 188; Viruses - 3; Other Eukaryotes - 4410 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034337
IDA
Gene OntologyRNA folding1
GO:1901259
IDA
Gene Ontologychloroplast rRNA processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019843
IDA
Gene OntologyrRNA binding1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
Gene Ontologyribosome
GO:0005840
IEA
InterProribosome
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 4
GO:0005576
HDA
Gene Ontologyextracellular region5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003029 S1 domain
IPR028909 Ribosomal protein L21-like
IPR012340 Nucleic acid-binding, OB-fold
IPR022967 RNA-binding domain, S1
Mapman id Description
35.1 not assigned.annotated