Gene: AT1G08170
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G08170
- Transcript Identifier AT1G08170.1
- Gene Type Coding gene
- Location Chr1 : 2562941-2563672 : negative
Gene Family Information
- ID HOM05D000437
- #Genes/#Species 1181/100
- Phylogenetic origin
- ID ORTHO05D000324
- #Genes/#Species 1111/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G08170.1
- uniprot Q9SGE3
Descriptions
- Description Histone superfamily protein
- Computational description Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1); Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0; Bacteria - 51; Metazoa - 2306; Fungi - 230; Plants - 467; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IBA | Gene Ontology | nucleosome assembly | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | Gene Ontology | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IBA | Gene Ontology | DNA binding | 1 |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.2 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B) |