Gene: AT1G04240
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G04240
- Transcript Identifier AT1G04240.2
- Gene Type Coding gene
- Location Chr1 : 1128564-1129619 : negative
Gene Family Information
- ID HOM05D000117
- #Genes/#Species 2876/97
- Phylogenetic origin
- ID ORTHO05D000070
- #Genes/#Species 2531/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G04240.2
- symbol SHY2
- Alias IAA3,indole-3-acetic acid inducible 3
- full_name SHORT HYPOCOTYL 2
- uniprot B0FV08
Descriptions
- Description AUX/IAA transcriptional regulator family protein
- Computational description SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | Gene Ontology | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009733 | IMP | Gene Ontology | response to auxin | 1 |
| GO:0009734 | IEA | GOA Database | auxin-activated signaling pathway | |
| GO:0010600 | ISO | PLAZA Integrative Orthology | regulation of auxin biosynthetic process | Solyc09g083280.3 |
| GO:0006950 | ISO | PLAZA Integrative Orthology | response to stress | Solyc09g083280.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 4 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 11.2.2.2 | Phytohormone action.auxin.perception and signal transduction.transcriptional repressor (IAA/AUX) |