Gene: AT1G01980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G01980
  • Transcript Identifier AT1G01980.1
  • Gene Type Coding gene
  • Location Chr1 : 340374-341999 : negative

Gene Family Information

  • ID HOM05D000128
  • #Genes/#Species 2706/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G01980.1
  • uniprot Q9LPC3

Descriptions

  • Description FAD-binding Berberine family protein
  • Computational description ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34; Bacteria - 1730; Metazoa - 0; Fungi - 1606; Plants - 712; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071949
IEA
Gene OntologyFAD binding
GO:0016899
IDA
Gene Ontologyoxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor1
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0050660
IEA
GOA Databaseflavin adenine dinucleotide binding
GO:0050660
IEA
InterProflavin adenine dinucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009505
IDA
Gene Ontologyplant-type cell wall2
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus3
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane4
GO:0005618
IEA
GOA Databasecell wall
GO:0005576
IEA
GOA Databaseextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006094 FAD linked oxidase, N-terminal
IPR036318 FAD-binding, type PCMH-like superfamily
IPR012951 Berberine/berberine-like
IPR016169 FAD-binding, type PCMH, subdomain 2
IPR016167 FAD-binding, type PCMH, subdomain 1
Mapman id Description
50.1.1 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor