Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia24144 Lachesis_group24 - View
Actinidia chinensis Actinidia07183 Lachesis_group13 - View
Arabidopsis lyrata AL1G18510 scaffold_1 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Z70S0B K10747 - DNA ligase 1 (LIG1) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E6T32I K10747 - DNA ligase 1 (LIG1) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT1G08130 DNA ligase 1 Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. DNA ligase 1 (LIG1)%3B FUNCTIONS IN: DNA binding%2C DNA ligase (ATP) activity%2C ATP binding%3B INVOLVED IN: DNA repair%2C DNA replication%2C DNA recombination%3B LOCATED IN: mitochondrion%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C DNA ligase%2C N-terminal (InterPro:IPR012308)%2C ATP dependent DNA ligase%2C central (InterPro:IPR012310)%2C ATP dependent DNA ligase%2C C-terminal (InterPro:IPR012309)%2C ATP-dependent DNA ligase (InterPro:IPR000977)%2C ATP-dependent DNA ligase%2C conserved site (InterPro:IPR016059)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1)%3B Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298%3B Bacteria - 1538%3B Metazoa - 375%3B Fungi - 434%3B Plants - 112%3B Viruses - 159%3B Other Eukaryotes - 640 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC05g24731 ChrC05 - View
Brassica carinata BcaC07g41965 ChrC07 - View
Brassica carinata BcaB07g34055 ChrB07 - View
Brassica napus C05p06240 C05 - View
Brassica napus A09p66010 A09 + View
Brassica napus A06p05190 A06 - View
Brassica napus C08p50170 C08 + View
Brassica oleracea BolC8t52546H C8 + View
Brassica oleracea BolC5t29379H C5 - View
Brassica rapa BraA09t41940Z A09 + View
Brassica rapa BraA06t23726Z A06 - View
Cardamine hirsuta CARHR007940 DNA ligase Chr1 - View
Capsella rubella Carub.0001s0748 K10747 - DNA ligase 1 (LIG1) scaffold_1 - View
Daucus carota DCAR_018768 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv29375 GWHABJS00000007 + View
Erythranthe guttata Migut.N02546 scaffold_14 + View
Eutrema salsugineum Thhalv10006843m.g K10747 - DNA ligase 1 (LIG1) scaffold_5 + View
Glycine max Glyma.12G080900 K10747 - DNA ligase 1 (LIG1) Gm12 - View
Glycine max Glyma.11G193100 PF01068//PF04675 - ATP dependent DNA ligase domain (DNA_ligase_A_M) // DNA ligase N terminus (DNA_ligase_A_N) Gm11 + View
Lupinus albus Lalb_Chr19g0136941 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 Lalb_Chr19 + View
Lupinus albus Lalb_Chr03g0027691 6.5.1.1 - DNA ligase (ATP) / Sealase Lalb_Chr03 - View
Lotus japonicus Lj3g0025418 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 chr3 - View
Malus domestica MD11G1147600 DNA ligase 1 Chr11 - View
Punica granatum PGR119G0273 NC_045132.1 + View
Phaseolus vulgaris Phvul.011G085900 Chr11 - View
Salvia bowleyana SalBow3G0225 GWHASIU00000006 + View
Sechium edule Sed0019273 LG05 + View
Tripterygium wilfordii TWI75G1147 NC_052253.1 - View
Vaccinium macrocarpon vmacro03256 Similar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G0172 CM024076.1 - View
Vitis vinifera GSVIVG01031470001 chr6 - View