Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G9650 LG-1 + View
Acer truncatum Atru.chr5.1184 chr5 - View
Actinidia chinensis Actinidia24835 Lachesis_group15 - View
Arabidopsis lyrata AL1G12350 scaffold_1 - View
Avicennia marina MSTRG.21621 ScioBoG_26769_HRSCAF_26899 + View
Aquilegia oxysepala Aqoxy5G00718 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6AV2XZ PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.16 + View
Arabidopsis thaliana AT1G02910 tetratricopeptide repeat (TPR)-containing protein Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly%2C each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. LOW PSII ACCUMULATION1 (LPA1)%3B FUNCTIONS IN: binding%3B INVOLVED IN: photosystem II oxygen evolving complex assembly%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1)%3B Has 201 Blast hits to 200 proteins in 49 species: Archae - 3%3B Bacteria - 57%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC07g36983 ChrC07 + View
Brassica carinata BcaB03g13497 ChrB03 + View
Brassica napus C08p00330 C08 - View
Brassica napus A08p37530 A08 + View
Brassica oleracea BolC8t46834H C8 - View
Brassica rapa BraA08t35650Z A08 + View
Camellia sinensis var. sinensis CSS0028015 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic-like [Pyrus x bretschneideri] Chr13 + View
Cannabis sativa CANSAT25G2142 NC_044370.1 + View
Cicer arietinum L. Ca_09145_v3 Ca_LG3_v3 + View
Corylus avellana Haze_04894 Similar to LPA1: Protein LOW PSII ACCUMULATION 1, chloroplastic (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc01_g20630 tetratricopeptide repeat (TPR)-containing protein chr1 + View
Citrus clementina Ciclev10020155m.g scaffold_3 + View
Carpinus fangiana Cfa005952 Cfa02 - View
Cardamine hirsuta CARHR002260 tetratricopeptide repeat (TPR)-containing protein Chr1 - View
Carya illinoinensis CiPaw.07G106200 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Chr07 + View
Carica papaya Cpa.g.sc9.206 supercontig_9 + View
Chenopodium quinoa AUR62008614 LPA1: Protein LOW PSII ACCUMULATION 1, chloroplastic C_Quinoa_Scaffold_1710 + View
Capsella rubella Carub.0001s0204 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC scaffold_1 - View
Davidia involucrata Dinv33033 GWHABJS00000010 + View
Durio zibethinus Duzib138G1578 NW_019167893.1 - View
Eucalyptus grandis Eucgr.H01162 Chr08 - View
Erythranthe guttata Migut.D00194 scaffold_4 + View
Eutrema salsugineum Thhalv10009985m.g PTHR17130:SF20 - PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC scaffold_5 + View
Fragaria x ananassa FAN24G0035 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Fvb2-2 - View
Fragaria x ananassa FAN20G1285 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Fvb2-3 - View
Fragaria x ananassa FAN27G1096 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Fvb2-1 - View
Fragaria vesca FvH4_2g25340 PTHR17130:SF20 - PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Fvb2 + View
Gossypium hirsutum Gohir.A11G115400 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC A11 - View
Gossypium hirsutum Gohir.D11G120400 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC D11 - View
Glycine max Glyma.03G212900 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Gm03 + View
Glycine max Glyma.19G209800 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Gm19 + View
Gossypium raimondii Gorai.007G129100 Chr07 - View
Helianthus annuus HanXRQChr15g0465901 Probable tetratricopeptide repeat (TPR)-containing protein HanXRQChr15 + View
Lupinus albus Lalb_Chr18g0047151 PTHR17130:SF20 - PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Lalb_Chr18 - View
Lotus japonicus Lj1g0010545 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC chr1 + View
Lonicera japonica Lj2C1190G10 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_9_5780 PTHR17130:SF20 - PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Lsat_1_v8_lg_9 - View
Malus domestica MD11G1304300 tetratricopeptide repeat (TPR)-containing protein Chr11 + View
Malus domestica MD03G1284800 tetratricopeptide repeat (TPR)-containing protein Chr03 + View
Manihot esculenta Manes.01G216900 Chromosome01 + View
Medicago truncatula Medtr7g108590 TPR repeat protein chr7 + View
Nelumbo nucifera Nn4g25853 chr4 - View
Punica granatum PGR119G0952 NC_045132.1 + View
Papaver somniferum PSO210G6313 NC_039359.1 - View
Populus trichocarpa Potri.002G206300 PTHR17130//PTHR17130:SF20 - MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25 // PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Chr02 - View
Phaseolus vulgaris Phvul.001G205600 PTHR17130:SF20 - PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC Chr01 + View
Quercus lobata QL12p027123 12 + View
Rhododendron simsii Rhsim01G0283700 chr01 + View
Striga asiatica SGA_v2.0_scaffold1G00381 scaffold1 - View
Salvia bowleyana SalBow3G3623 GWHASIU00000006 + View
Salix brachista Sabra02G0153000 GWHAAZH00000002 + View
Simmondsia chinensis Sc05g0004220 GWHAASQ00000005 - View
Solanum lycopersicum Solyc09g074880.4 Protein LOW PSII ACCUMULATION 1, chloroplastic (AHRD V3.3 *** A0A2G2W035_CAPBA) SL4.0ch09 + View
Solanum pennellii Sopen09g029700 Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. | LOW PSII ACCUMULATION1 (LPA1) | FUNCTIONS IN: binding | INVOLVED IN: photosystem II oxygen evolving complex assembly | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 , Tetratricopeptide-like helical , Tetratricopeptide repeat-containing , Tetratricopeptide repeat | BEST Arabidopsis thaliana protein match is: unknown protein Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG401011368 Conserved gene of unknown function ST4.03ch09 + View
Selenicereus undatus Hund05411 Scaffold_19641 + View
Theobroma cacao Thecc.01G296900 Tetratricopeptide repeat-containing protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104801568 protein LOW PSII ACCUMULATION 1%2C chloroplastic NW_010969548.1 + View
Trifolium pratense TPR.G9618 Tp57577_TGAC_v2_LG6 - View
Vigna mungo VMungo1383G2530 CM024070.1 + View
Vitis vinifera GSVIVG01027972001 chr7 + View
Zea mays Zm00001eb131600 Zm00001e017629 Protein LOW PSII ACCUMULATION 1 chloroplastic 3 - View