Gene: Sopen09g029700

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g029700
  • Transcript Identifier Sopen09g029700.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 78086132-78090698 : positive

Gene Family Information

  • ID HOM05D003036
  • #Genes/#Species 227/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g029700.1

Descriptions

  • Description Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. | LOW PSII ACCUMULATION1 (LPA1) | FUNCTIONS IN: binding | INVOLVED IN: photosystem II oxygen evolving complex assembly | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 , Tetratricopeptide-like helical , Tetratricopeptide repeat-containing , Tetratricopeptide repeat | BEST Arabidopsis thaliana protein match is: unknown protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010270
ISO
PLAZA Integrative Orthologyphotosystem II oxygen evolving complex assembly AT1G02910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G02910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019734 Tetratricopeptide repeat
IPR021883 Protein LOW PSII ACCUMULATION 1-like
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
1.1.1.3.1 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA1)