Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g031640 JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect. | JACKDAW (JKD) | FUNCTIONS IN: protein binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of epidermal cell differentiation, regulation of meristem growth, regulation of cell division, root development, regulation of transcription | LOCATED IN: intracellular | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like , Zinc finger, C2H2-type , Zinc finger, double-stranded RNA binding | BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein Spenn-ch06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G14570 LG-4 - View
Acer truncatum Atru.chr8.1882 chr8 - View
Acer truncatum Atru.chr3.3667 chr3 - View
Actinidia chinensis Actinidia07126 Lachesis_group13 + View
Actinidia chinensis Actinidia24090 Lachesis_group24 + View
Arabidopsis lyrata AL8G37070 scaffold_8 + View
Arabidopsis lyrata AL5G23860 scaffold_5 - View
Avicennia marina MSTRG.12321 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.18652 ScioBoG_22153_HRSCAF_22259 + View
Aquilegia oxysepala Aqoxy4G03249 CHR04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MH5UWC PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H7D8HY PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YDP8E4 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT3G45260 C2H2-like zinc finger protein C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%2C Zinc finger%2C double-stranded RNA binding (InterPro:IPR022755)%3B BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G60470.1)%3B Has 54288 Blast hits to 20581 proteins in 284 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 49362%3B Fungi - 343%3B Plants - 724%3B Viruses - 2%3B Other Eukaryotes - 3850 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT5G60470 C2H2 and C2HC zinc fingers superfamily protein C2H2 and C2HC zinc fingers superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B EXPRESSED IN: stem%2C sepal%2C carpel%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%2C Zinc finger%2C double-stranded RNA binding (InterPro:IPR022755)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G45260.1)%3B Has 38003 Blast hits to 17147 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 35900%3B Fungi - 231%3B Plants - 711%3B Viruses - 1%3B Other Eukaryotes - 1160 (source: NCBI BLink). Chr5 + View
Brassica napus C03p69870 C03 - View
Brassica rapa BraA06t25235Z A06 + View
Beta vulgaris EL10Ac7g16535 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0045915 PREDICTED: zinc finger protein JACKDAW-like [Vitis vinifera] Chr11 - View
Capsicum annuum CAN.G631.11 PGAv.1.6.scaffold631 - View
Capsicum annuum CAN.G1001.24 PGAv.1.6.scaffold1001 + View
Cannabis sativa CANSAT54G1826 NC_044375.1 + View
Cicer arietinum L. Ca_11462_v3 Ca_LG4_v3 + View
Corylus avellana Haze_20615 Similar to JKD: Zinc finger protein JACKDAW (Arabidopsis thaliana OX%3D3702) 10 - View
Corylus avellana Haze_23885 Similar to BIB: Zinc finger protein BALDIBIS (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc06_g03810 Putative uncharacterized protein chr6 + View
Coffea canephora Cc01_g11310 Putative uncharacterized protein chr1 - View
Citrus clementina Ciclev10028294m.g scaffold_8 - View
Citrus clementina Ciclev10011592m.g scaffold_6 - View
Carpinus fangiana Cfa017533 Cfa07 + View
Carpinus fangiana Cfa011349 Cfa04 - View
Cardamine hirsuta CARHR274130 Zinc finger protein-like Chr8 + View
Cardamine hirsuta CARHR150650 Zinc finger family protein Chr5 + View
Carya illinoinensis CiPaw.13G109300 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Chr13 + View
Citrullus lanatus ClCG03G002260 Zinc finger family protein CG_Chr03 - View
Citrullus lanatus ClCG10G020380 Zinc finger protein CG_Chr10 - View
Cucumis melo MELO3C009332.2 protein indeterminate-domain 9 chr04 - View
Cucumis melo MELO3C005046.2 protein indeterminate-domain 2 chr12 - View
Carica papaya Cpa.g.sc216.25 supercontig_216 - View
Capsella rubella Carub.0008s2116 PTHR10593//PTHR10593:SF28 - SERINE/THREONINE-PROTEIN KINASE RIO // C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN scaffold_8 + View
Capsella rubella Carub.0005s1112 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED scaffold_5 - View
Cucumis sativus L. CsaV3_6G039430 protein indeterminate-domain 9 chr6 + View
Cucumis sativus L. CsaV3_1G012940 protein indeterminate-domain 2 chr1 - View
Cucumis sativus L. CsaV3_3G035720 protein indeterminate-domain 9 chr3 + View
Daucus carota DCAR_018822 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv32764 GWHABJS00000010 - View
Davidia involucrata Dinv35744 GWHABJS00000015 + View
Davidia involucrata Dinv37274 GWHABJS00000021 - View
Durio zibethinus Duzib093G0684 NW_019167937.1 - View
Durio zibethinus Duzib150G0217 NW_019167882.1 + View
Durio zibethinus Duzib128G0139 NW_019168481.1 - View
Durio zibethinus Duzib168G1581 NW_019168159.1 + View
Erigeron canadensis ECA233G3935 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA248G3624 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA238G4443 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.B02487 Chr02 + View
Eucalyptus grandis Eucgr.A01159 Chr01 + View
Eucalyptus grandis Eucgr.J00939 Chr10 - View
Erythranthe guttata Migut.D02202 scaffold_4 + View
Eutrema salsugineum Thhalv10002526m.g PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED scaffold_4 + View
Eutrema salsugineum Thhalv10016023m.g PTHR10593:SF28 - C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN scaffold_2 - View
Fragaria x ananassa FAN11G1839 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb3-4 + View
Fragaria x ananassa FAN02G1019 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb6-4 + View
Fragaria x ananassa FAN14G4299 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb6-1 - View
Fragaria x ananassa FAN21G0099 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb3-2 - View
Fragaria x ananassa FAN16G0493 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb3-3 - View
Fragaria x ananassa FAN25G3646 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Fvb3-1 + View
Fragaria x ananassa FAN09G2472 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Fvb6-2 - View
Fragaria vesca FvH4_6g15680 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Fvb6 + View
Fragaria vesca FvH4_3g32700 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Fvb3 - View
Gossypium hirsutum Gohir.D07G121500 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED D07 + View
Gossypium hirsutum Gohir.D09G103400 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW D09 + View
Gossypium hirsutum Gohir.A09G106700 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW A09 + View
Glycine max Glyma.12G171700 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Gm12 + View
Glycine max Glyma.03G179700 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Gm03 + View
Glycine max Glyma.10G051500 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Gm10 + View
Glycine max Glyma.13G327500 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Gm13 - View
Glycine max Glyma.12G070300 PTHR10593//PTHR10593:SF51 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Gm12 - View
Gossypium raimondii Gorai.001G131000 Chr01 + View
Gossypium raimondii Gorai.006G120000 Chr06 - View
Helianthus annuus HanXRQChr14g0452961 Probable indeterminate(ID)-domain 7 HanXRQChr14 + View
Helianthus annuus HanXRQChr02g0055651 Probable indeterminate(ID)-domain 4 HanXRQChr02 + View
Helianthus annuus HanXRQChr01g0018281 Putative zinc finger, C2H2-like; Zinc finger, double-stranded RNA binding HanXRQChr01 + View
Lupinus albus Lalb_Chr14g0374731 PTHR10593//PTHR10593:SF51 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Lalb_Chr14 - View
Lupinus albus Lalb_Chr19g0137351 KOG3576 - Ovo and related transcription factors Lalb_Chr19 - View
Lupinus albus Lalb_Chr22g0350211 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Lalb_Chr22 + View
Lotus japonicus Lj3g0010732 PTHR10593//PTHR10593:SF51 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED chr3 + View
Lonicera japonica Lj2A1030T63 GWHAAZE00000002 - View
Lonicera japonica Lj2C110T9 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_1_65581 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_2_98240 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_6_46760 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Lsat_1_v8_lg_6 - View
Malus domestica MD11G1133100 C2H2-like zinc finger protein Chr11 + View
Malus domestica MD04G1100300 C2H2-like zinc finger protein Chr04 - View
Malus domestica MD12G1120300 C2H2-like zinc finger protein Chr12 - View
Malus domestica MD03G1114800 C2H2-like zinc finger protein Chr03 - View
Manihot esculenta Manes.08G005700 Chromosome08 + View
Manihot esculenta Manes.11G142900 Chromosome11 + View
Manihot esculenta Manes.04G023700 Chromosome04 - View
Medicago truncatula Medtr2g093960 C2H2-type zinc finger protein chr2 + View
Medicago truncatula Medtr4g059870 C2H2 and C2HC zinc finger protein, putative chr4 - View
Nelumbo nucifera Nn2g13065 chr2 + View
Nelumbo nucifera Nn2g10748 chr2 + View
Nicotiana tabacum Nitab4.5_0000650g0060 Zinc finger, C2H2, Zinc finger, C2H2-like, Zinc finger C2H2-type/integrase DNA-binding domain Nitab4.5_0000650 + View
Nicotiana tabacum Nitab4.5_0000106g0080 Zinc finger, C2H2, Zinc finger C2H2-type/integrase DNA-binding domain, Zinc finger, C2H2-like Nitab4.5_0000106 + View
Petunia axillaris Peaxi162Scf00270g01116 C2H2-like zinc finger protein Peaxi162Scf00270 - View
Punica granatum PGR004G1524 NC_045131.1 - View
Prunus persica Prupe.6G238500 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Pp06 - View
Prunus persica Prupe.6G098800 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Pp06 + View
Pisum sativum Psat7g224080 Zinc finger C2H2 type domain profile. chr7LG7 + View
Pisum sativum Psat5g277680 Zinc-finger double-stranded RNA-binding chr5LG3 + View
Papaver somniferum PSO384G3817 NC_039368.1 - View
Papaver somniferum PSO063G3826 NC_039364.1 - View
Papaver somniferum PSO339G1214 NC_039366.1 - View
Populus trichocarpa Potri.006G129300 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Chr06 - View
Populus trichocarpa Potri.016G088500 PTHR10593//PTHR10593:SF42 - SERINE/THREONINE-PROTEIN KINASE RIO // ZINC FINGER PROTEIN JACKDAW Chr16 + View
Phaseolus vulgaris Phvul.011G074100 PTHR10593//PTHR10593:SF51 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Chr11 + View
Phaseolus vulgaris Phvul.001G176200 PTHR10593:SF42 - ZINC FINGER PROTEIN JACKDAW Chr01 + View
Phaseolus vulgaris Phvul.005G136300 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED Chr05 - View
Quercus lobata QL01p022905 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0059771 RcHm_v2.0_Chr5 - View
Rosa chinensis RcHm_v2.0_Chr3g0469381 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim05G0183000 chr05 - View
Striga asiatica SGA_v2.0_scaffold75G24873 scaffold75 - View
Striga asiatica SGA_v2.0_scaffold97G29198 scaffold97 + View
Salvia bowleyana SalBow3G2498 GWHASIU00000006 + View
Sechium edule Sed0025329 LG03 + View
Solanum lycopersicum Solyc06g075250.3 Zinc finger protein JACKDAW (AHRD V3.3 *** A0A1U8HBP2_CAPAN) SL4.0ch06 - View
Solanum lycopersicum Solyc09g007550.3 Protein indeterminate-domain 12 (AHRD V3.3 *** A0A2G2V7B7_CAPBA) SL4.0ch09 + View
Solanum lycopersicum Solyc11g069240.2 Protein indeterminate-domain 2 (AHRD V3.3 *** A0A2G3BBG6_CAPCH) SL4.0ch11 + View
Schrenkiella parvula Sp5g16040 PTHR10593//PTHR10593:SF45 - SERINE/THREONINE-PROTEIN KINASE RIO // SUBFAMILY NOT NAMED ch5-1 + View
Schrenkiella parvula Sp6g22060 PTHR10593//PTHR10593:SF28 - SERINE/THREONINE-PROTEIN KINASE RIO // C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN ch6-6 + View
Solanum tuberosum PGSC0003DMG400008110 Nucleic acid binding protein ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400003372 Nucleic acid binding protein ST4.03ch06 - View
Trochodendron aralioides TAR623G1421 group7 + View
Trochodendron aralioides TAR636G1842 group1 + View
Trochodendron aralioides TAR633G0506 group2 - View
Trochodendron aralioides TAR369G0993 group18 + View
Theobroma cacao Thecc.05G057400 C2H2-like zinc finger protein Chromosome_5 + View
Theobroma cacao Thecc.09G257800 Nucleic acid binding protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104814834 protein indeterminate-domain 9-like NW_010965541.1 - View
Tarenaya hassleriana THA.LOC104799497 protein indeterminate-domain 9 NW_010968505.1 + View
Trifolium pratense TPR.G18262 Tp57577_TGAC_v2_scaf_359 + View
Trifolium pratense TPR.G15534 Tp57577_TGAC_v2_LG4 - View
Trifolium pratense TPR.G11554 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI75G1376 NC_052253.1 + View
Tripterygium wilfordii TWI79G1702 NC_052238.1 + View
Utricularia gibba unitig_747.g22003 unitig_747 - View
Utricularia gibba unitig_899.g14910 unitig_899 + View
Vigna mungo VMungo1383G0655 CM024070.1 + View
Vigna mungo VMungo1127G0358 CM024076.1 + View
Vigna mungo VMungo1080G0625 CM024079.1 + View
Vitis vinifera GSVIVG01025658001 chr8 - View
Vitis vinifera GSVIVG01025166001 chr6 - View