Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g032500 Actin-58 - Solanum tuberosum (Potato), Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development. | actin-12 (ACT12) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: cytoskeleton organization | LOCATED IN: mitochondrion, cytoskeleton | EXPRESSED IN: 12 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Actin, conserved site , Actin/actin-like , Actin/actin-like conserved site | BEST Arabidopsis thaliana protein match is: actin 4 Spenn-ch06 + View
Sopen11g004280 Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission. | actin-related protein 7 (ARP7) | CONTAINS InterPro DOMAIN/s: Actin/actin-like | BEST Arabidopsis thaliana protein match is: actin 3 Spenn-ch11 + View
Sopen05g032960 Actin-58 - Solanum tuberosum (Potato), Encodes an actin that is expressed predominantly during reproductive development. | actin-11 (ACT11) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: response to cyclopentenone, actin cytoskeleton organization | LOCATED IN: mitochondrion, cytoskeleton, plasma membrane | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Actin, conserved site , Actin/actin-like , Actin/actin-like conserved site | BEST Arabidopsis thaliana protein match is: actin 3 Spenn-ch05 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31sc23G450 sc-23 - View
Acer truncatum Atru.chr12.455 chr12 - View
Acer truncatum Atru.chr3.3893 chr3 + View
Acer truncatum Atru.chr8.1968 chr8 + View
Actinidia chinensis Actinidia37208 Lachesis_group24 - View
Actinidia chinensis Actinidia07734 Lachesis_group3 + View
Actinidia chinensis Actinidia34404 Lachesis_group15 - View
Arabidopsis lyrata AL5G25390 scaffold_5 + View
Amaranthus hybridus Ah.08g219470 Actin AmaHy_arrow1_Scaffold_8 + View
Aquilegia oxysepala Aqoxy4G02914 CHR04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E6VM83 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4PL1ZQ PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT2G37620 actin 1 Member of the actin gene family. Expressed in mature pollen. actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G46520 actin-12 Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs%2C low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues%2C tapetum%2C developing and mature pollen%2C the root cap and in a ring of pericycle tissues during lateral root initiation and early development. actin-12 (ACT12)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: mitochondrion%2C cytoskeleton%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 4 (TAIR:AT5G59370.2)%3B Has 15176 Blast hits to 14784 proteins in 3040 species: Archae - 8%3B Bacteria - 8%3B Metazoa - 5711%3B Fungi - 5220%3B Plants - 1602%3B Viruses - 2%3B Other Eukaryotes - 2625 (source: NCBI BLink). Chr3 + View
Beta vulgaris EL10Ac7g16009 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0023400 actin [Camellia sinensis] Chr1 + View
Capsicum annuum CAN.G327.16 PGAv.1.6.scaffold327 - View
Capsicum annuum CAN.G1013.25 PGAv.1.6.scaffold1013 + View
Cicer arietinum L. Ca_01331_v3 Ca_LG1_v3 - View
Corylus avellana Haze_17066 Similar to ACT1: Actin-1 (Oryza sativa subsp. indica OX%3D39946) 11 + View
Corylus avellana Haze_24087 Similar to ACT1: Actin-1 (Oryza sativa subsp. indica OX%3D39946) 6 + View
Coffea canephora Cc06_g02700 Actin chr6 - View
Coffea canephora Cc01_g12770 Actin-11 chr1 + View
Coffea canephora Cc02_g07890 Actin chr2 - View
Citrus clementina Ciclev10028665m.g scaffold_8 + View
Carpinus fangiana Cfa017387 Cfa07 - View
Carpinus fangiana Cfa011492 Cfa04 + View
Cardamine hirsuta CARHR155270 Actin-12 Chr5 - View
Carya illinoinensis CiPaw.02G183700 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Chr02 + View
Carya illinoinensis CiPaw.01G287100 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Chr01 + View
Citrullus lanatus ClCG02G020200 Actin CG_Chr02 - View
Corchorus olitorius COL.COLO4_18501 Actin-related protein AWUE01016469.1 + View
Carica papaya Cpa.g.sc81.159 supercontig_81 - View
Carica papaya Cpa.g.sc1.401 supercontig_1 + View
Chenopodium quinoa AUR62001795 Actin C_Quinoa_Scaffold_2716 - View
Chenopodium quinoa AUR62009583 Actin C_Quinoa_Scaffold_2493 - View
Cucumis sativus L. CsaV3_4G024970 Actin chr4 + View
Davidia involucrata Dinv16992 GWHABJS00000527 + View
Davidia involucrata Dinv03050 GWHABJS00000004 + View
Davidia involucrata Dinv42941 GWHABJS00000085 + View
Davidia involucrata Dinv43159 GWHABJS00000085 - View
Davidia involucrata Dinv12415 GWHABJS00000007 + View
Davidia involucrata Dinv26012 GWHABJS00000009 - View
Durio zibethinus Duzib168G1302 NW_019168159.1 - View
Durio zibethinus Duzib093G1166 NW_019167937.1 + View
Durio zibethinus Duzib114G0047 NW_019167926.1 - View
Durio zibethinus Duzib128G0296 NW_019168481.1 + View
Durio zibethinus Duzib106G0274 NW_019168492.1 + View
Durio zibethinus Duzib170G1104 NW_019167871.1 - View
Eucalyptus grandis Eucgr.J00015 Chr10 - View
Erythranthe guttata Migut.J00333 scaffold_10 - View
Eutrema salsugineum Thhalv10002572m.g PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED scaffold_4 - View
Eutrema salsugineum Thhalv10016809m.g PTHR11937:SF236 - ACTIN-1-RELATED scaffold_10 + View
Fragaria x ananassa FAN06G1830 1.3.1.93 - Very-long-chain enoyl-CoA reductase Fvb7-2 + View
Fragaria x ananassa FAN21G3867 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb3-2 + View
Fragaria x ananassa FAN25G1755 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb3-1 + View
Fragaria x ananassa FAN14G4361 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb6-1 + View
Fragaria x ananassa FAN01G0844 1.3.1.93 - Very-long-chain enoyl-CoA reductase Fvb7-4 - View
Fragaria x ananassa FAN03G2181 1.3.1.93 - Very-long-chain enoyl-CoA reductase Fvb7-3 - View
Fragaria x ananassa FAN16G3391 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb3-3 + View
Fragaria x ananassa FAN05G1571 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb6-3 + View
Fragaria x ananassa FAN06G1643 1.3.1.93 - Very-long-chain enoyl-CoA reductase Fvb7-2 - View
Fragaria x ananassa FAN11G0728 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb3-4 - View
Fragaria vesca FvH4_3g35960 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Fvb3 + View
Fragaria vesca FvH4_7g22410 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Fvb7 + View
Gossypium hirsutum Gohir.D07G102500 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED D07 + View
Gossypium hirsutum Gohir.A07G098200 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED A07 + View
Gossypium hirsutum Gohir.D03G126200 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED D03 - View
Glycine max Glyma.11G139800 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Gm11 - View
Glycine max Glyma.12G063400 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Gm12 - View
Glycine max Glyma.15G038700 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Gm15 - View
Glycine max Glyma.13G335600 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Gm13 + View
Gossypium raimondii Gorai.003G132400 Chr03 - View
Gossypium raimondii Gorai.001G110400 Chr01 + View
Hydrangea macrophylla Hma1.2p1_0035F.1_g022330 Hma1.2p1_0035F.1 + View
Lupinus albus Lalb_Chr19g0137811 K10355 - actin, other eukaryote (ACTF) Lalb_Chr19 + View
Lotus japonicus Lj3g0015374 K10355 - actin, other eukaryote (ACTF) chr3 - View
Lotus japonicus Lj3g0021164 K10355 - actin, other eukaryote (ACTF) chr3 - View
Lonicera japonica Lj1A937T94 GWHAAZE00000001 + View
Malus domestica MD11G1110300 actin 3 Chr11 - View
Malus domestica MD04G1127400 actin 3 Chr04 + View
Malus domestica MD07G1198000 actin-11 Chr07 + View
Malus domestica MD03G1095300 actin-11 Chr03 - View
Manihot esculenta Manes.07G115900 Chromosome07 + View
Medicago truncatula Medtr2g096840 actin-97 chr2 + View
Nicotiana tabacum Nitab4.5_0001800g0170 Actin-related protein, Actin/actin-like conserved site, Actin, conserved site Nitab4.5_0001800 + View
Nicotiana tabacum Nitab4.5_0006994g0040 Actin, conserved site, Actin-related protein, Actin/actin-like conserved site Nitab4.5_0006994 + View
Petunia axillaris Peaxi162Scf00679g00410 actin-11 Peaxi162Scf00679 + View
Petunia axillaris Peaxi162Scf00015g01118 actin-11 Peaxi162Scf00015 - View
Petunia axillaris Peaxi162Scf00832g00019 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A Peaxi162Scf00832 - View
Petunia axillaris Peaxi162Scf00165g01317 actin-11 Peaxi162Scf00165 + View
Punica granatum PGR102G0544 NC_045129.1 + View
Punica granatum PGR044G2194 NC_045134.1 + View
Prunus persica Prupe.6G254100 PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMED Pp06 + View
Prunus persica Prupe.6G078800 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Pp06 - View
Papaver somniferum PSO151G0190 NW_020650971.1 + View
Papaver somniferum PSO384G2669 NC_039368.1 - View
Papaver somniferum PSO339G5591 NC_039366.1 + View
Phaseolus vulgaris Phvul.011G064500 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED Chr11 - View
Phaseolus vulgaris Phvul.L005043 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED scaffold_15 + View
Quercus lobata QL01p032232 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0064311 RcHm_v2.0_Chr5 + View
Rosa chinensis RcHm_v2.0_Chr3g0466761 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim01G0227200 chr01 + View
Rhododendron simsii Rhsim09G0165700 chr09 + View
Rhododendron simsii Rhsim13G0083300 chr13 - View
Salvia bowleyana SalBow4G3043 GWHASIU00000008 - View
Simmondsia chinensis Sc21g0005740 GWHAASQ00000021 + View
Sechium edule Sed0007339 LG14 + View
Solanum lycopersicum Solyc09g010750.3 Actin (AHRD V3.3 *** A0A0K1JSF1_9FABA) SL4.0ch09 + View
Solanum lycopersicum Solyc05g054480.3 Actin (AHRD V3.3 *** A0A2G2VVS8_CAPBA) SL4.0ch05 - View
Solanum lycopersicum Solyc06g076090.3 Actin (AHRD V3.3 *** A0A1U8H9K1_CAPAN) SL4.0ch06 + View
Solanum lycopersicum Solyc11g065990.2 Actin (AHRD V3.3 *** A0A2G2VVS8_CAPBA) SL4.0ch11 - View
Solanum lycopersicum Solyc11g008500.2 Actin-related protein (AHRD V3.3 *** A0A2R6Q6P8_ACTCH) SL4.0ch11 + View
Schrenkiella parvula Sp4g19980 PTHR11937//PTHR11937:SF236 - ACTIN // ACTIN-1-RELATED ch4-6 + View
Schrenkiella parvula Sp5g15160 PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMED ch5-1 - View
Solanum tuberosum PGSC0003DMG400008912 Actin-71 ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400000439 Actin-11 ST4.03ch11 - View
Solanum tuberosum PGSC0003DMG400030319 Actin ST4.03ch06 + View
Solanum tuberosum PGSC0003DMG400023429 Actin-58 ST4.03ch05 - View
Selenicereus undatus Hund04967 Scaffold_19641 - View
Selenicereus undatus Hund18915 Scaffold_33675 - View
Trochodendron aralioides TAR623G1620 group7 - View
Trochodendron aralioides TAR633G0140 group2 - View
Theobroma cacao Thecc.10G042700 Actin-11 Chromosome_10 - View
Theobroma cacao Thecc.09G322700 Actin-11 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104799444 actin NW_010968505.1 - View
Tarenaya hassleriana THA.LOC104810782 actin-11 NW_010965304.1 - View
Trifolium pratense TPR.G34313 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI15G0930 NC_052247.1 + View
Tripterygium wilfordii TWI31G0558 NC_052233.1 - View
Tripterygium wilfordii TWI75G1685 NC_052253.1 - View
Vigna mungo VMungo1080G1857 CM024079.1 - View
Vigna mungo VMungo1127G0262 CM024076.1 - View
Vitis vinifera GSVIVG01016550001 chr13 - View
Vitis vinifera GSVIVG01024980001 chr6 + View