Gene: Sopen06g032500

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g032500
  • Transcript Identifier Sopen06g032500.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 58160146-58161974 : positive

Gene Family Information

  • ID HOM05D000173
  • #Genes/#Species 2168/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g032500.1

Descriptions

  • Description Actin-58 - Solanum tuberosum (Potato), Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development. | actin-12 (ACT12) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: cytoskeleton organization | LOCATED IN: mitochondrion, cytoskeleton | EXPRESSED IN: 12 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Actin, conserved site , Actin/actin-like , Actin/actin-like conserved site | BEST Arabidopsis thaliana protein match is: actin 4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007010
ISO
PLAZA Integrative Orthologycytoskeleton organization AT3G46520
GO:0048768
ISO
PLAZA Integrative Orthologyroot hair cell tip growth AT1G49240

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G49240

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G46520
GO:0005856
ISO
PLAZA Integrative Orthologycytoskeleton AT3G46520
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G49240
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G46520
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT3G46520
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G49240
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT1G49240
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G49240

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004000 Actin family
IPR043129 ATPase, nucleotide binding domain
Mapman id Description
20.2.1 Cytoskeleton organisation.microfilament network.actin filament protein