Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
Sopen12g024500 | hypothetical protein | Spenn-ch12 | + | View |
Sopen10g021810 | hypothetical protein | Spenn-ch10 | + | View |
Sopen01g027430 | hypothetical protein | Spenn-ch01 | - | View |
Sopen04g020870 | hypothetical protein | Spenn-ch04 | - | View |
Sopen09g016880 | hypothetical protein | Spenn-ch09 | - | View |
Sopen11g023860 | hypothetical protein | Spenn-ch11 | + | View |
Sopen06g014290 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Reverse transcriptase, RNA-dependent DNA polymerase, Encodes a cysteine-rich receptor-like protein kinase. | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8) | FUNCTIONS IN: kinase activity | INVOLVED IN: protein amino acid phosphorylation | CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site , Reverse transcriptase, RNA-dependent DNA polymerase , Serine/threonine-protein kinase domain , Protein of unknown function DUF26 , Serine/threonine-protein kinase-like domain , Serine/threonine-protein kinase, active site , Protein kinase-like domain , Protein kinase, catalytic domain , Tyrosine-protein kinase, catalytic domain | BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6 | Spenn-ch06 | - | View |
Sopen10g006450 | hypothetical protein | Spenn-ch10 | + | View |
Sopen00g005870 | hypothetical protein | Spenn-ch00 | - | View |
Sopen01g009690 | hypothetical protein | GAG/POL/ENV polyprotein. | Spenn-ch01 | - | View |
Sopen06g005270 | hypothetical protein | Spenn-ch06 | + | View |
Sopen01g010600 | hypothetical protein | Spenn-ch01 | + | View |
Sopen09g024400 | hypothetical protein | GAG/POL/ENV polyprotein. | Spenn-ch09 | - | View |
Sopen05g012930 | hypothetical protein | Spenn-ch05 | + | View |
Sopen10g025720 | hypothetical protein | Spenn-ch10 | - | View |
Sopen07g009690 | hypothetical protein | Spenn-ch07 | - | View |
Sopen01g014820 | hypothetical protein | Spenn-ch01 | - | View |
Sopen03g009790 | hypothetical protein | Spenn-ch03 | - | View |
Sopen00g005220 | hypothetical protein | Spenn-ch00 | - | View |
Sopen09g013420 | hypothetical protein | Spenn-ch09 | + | View |
Sopen09g021250 | hypothetical protein | Spenn-ch09 | + | View |
Sopen03g020340 | RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), hypothetical protein | GAG/POL/ENV polyprotein. | Spenn-ch03 | - | View |
Sopen10g024170 | hypothetical protein | Spenn-ch10 | - | View |
Sopen09g012850 | hypothetical protein | Spenn-ch09 | - | View |
Sopen04g009460 | hypothetical protein | Spenn-ch04 | - | View |
Sopen05g017220 | hypothetical protein | Spenn-ch05 | + | View |
Sopen08g016860 | hypothetical protein | DNA/RNA polymerases superfamily protein. | Spenn-ch08 | - | View |
Sopen06g004680 | hypothetical protein | Spenn-ch06 | + | View |
Sopen00g006350 | unknown protein | Spenn-ch00 | - | View |
Sopen10g008270 | hypothetical protein | Spenn-ch10 | - | View |
Sopen10g021490 | hypothetical protein | Spenn-ch10 | + | View |
Sopen10g020400 | hypothetical protein | Spenn-ch10 | + | View |
Sopen07g017480 | hypothetical protein | Spenn-ch07 | + | View |
Sopen04g017190 | hypothetical protein | Spenn-ch04 | + | View |
Sopen11g021560 | hypothetical protein | DNA/RNA polymerases superfamily protein. | Spenn-ch11 | - | View |
Sopen07g013680 | hypothetical protein | Spenn-ch07 | - | View |
Sopen01g009290 | hypothetical protein | Spenn-ch01 | - | View |
Sopen01g018090 | hypothetical protein | Spenn-ch01 | + | View |
Sopen02g009380 | hypothetical protein | Spenn-ch02 | + | View |
Sopen01g013240 | hypothetical protein | Spenn-ch01 | - | View |
Sopen12g008440 | hypothetical protein | Spenn-ch12 | + | View |
Sopen03g016680 | hypothetical protein | Spenn-ch03 | - | View |
Sopen01g015540 | hypothetical protein | GAG/POL/ENV polyprotein. | Spenn-ch01 | - | View |
Sopen02g008620 | hypothetical protein | Spenn-ch02 | - | View |
Sopen06g010870 | Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 | Spenn-ch06 | + | View |
Sopen06g009380 | hypothetical protein | Spenn-ch06 | - | View |
Sopen01g024110 | hypothetical protein | Spenn-ch01 | + | View |
Sopen04g012830 | hypothetical protein | Spenn-ch04 | + | View |
Sopen12g009420 | hypothetical protein | Spenn-ch12 | - | View |
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Erigeron canadensis | ECA232G4319 | Conyza_canadensis_scaffold:2 | + | View | |
Erigeron canadensis | ECA236G0205 | Conyza_canadensis_scaffold:3 | + | View | |
Erigeron canadensis | ECA238G4057 | Conyza_canadensis_scaffold:6 | - | View | |
Erigeron canadensis | ECA232G3149 | Conyza_canadensis_scaffold:2 | + | View | |
Erigeron canadensis | ECA240G2087 | Conyza_canadensis_scaffold:5 | - | View | |
Erigeron canadensis | ECA236G2398 | Conyza_canadensis_scaffold:3 | - | View | |
Erigeron canadensis | ECA234G0264 | Conyza_canadensis_scaffold:4 | + | View | |
Erigeron canadensis | ECA246G1433 | Conyza_canadensis_scaffold:8 | - | View | |
Erigeron canadensis | ECA247G3449 | Conyza_canadensis_scaffold:7 | - | View | |
Erigeron canadensis | ECA248G0677 | Conyza_canadensis_scaffold:9 | + | View | |
Erigeron canadensis | ECA247G3783 | Conyza_canadensis_scaffold:7 | - | View | |
Erigeron canadensis | ECA236G3930 | Conyza_canadensis_scaffold:3 | - | View | |
Erigeron canadensis | ECA233G1213 | Conyza_canadensis_scaffold:1 | - | View | |
Erigeron canadensis | ECA238G1884 | Conyza_canadensis_scaffold:6 | - | View | |
Erigeron canadensis | ECA240G1865 | Conyza_canadensis_scaffold:5 | - | View | |
Erigeron canadensis | ECA247G0609 | Conyza_canadensis_scaffold:7 | + | View | |
Erigeron canadensis | ECA248G2569 | Conyza_canadensis_scaffold:9 | - | View | |
Erigeron canadensis | ECA238G2059 | Conyza_canadensis_scaffold:6 | + | View | |
Erigeron canadensis | ECA232G4645 | Conyza_canadensis_scaffold:2 | - | View | |
Erigeron canadensis | ECA232G3224 | Conyza_canadensis_scaffold:2 | + | View | |
Erigeron canadensis | ECA234G2121 | Conyza_canadensis_scaffold:4 | + | View | |
Erigeron canadensis | ECA234G0125 | Conyza_canadensis_scaffold:4 | + | View | |
Erigeron canadensis | ECA236G2513 | Conyza_canadensis_scaffold:3 | - | View | |
Erigeron canadensis | ECA232G2659 | Conyza_canadensis_scaffold:2 | + | View | |
Erigeron canadensis | ECA236G0448 | Conyza_canadensis_scaffold:3 | + | View | |
Erigeron canadensis | ECA240G0228 | Conyza_canadensis_scaffold:5 | - | View | |
Erigeron canadensis | ECA234G2437 | Conyza_canadensis_scaffold:4 | + | View | |
Erigeron canadensis | ECA238G4169 | Conyza_canadensis_scaffold:6 | + | View | |
Erigeron canadensis | ECA236G1603 | Conyza_canadensis_scaffold:3 | + | View | |
Erigeron canadensis | ECA238G0313 | Conyza_canadensis_scaffold:6 | - | View | |
Erigeron canadensis | ECA246G1702 | Conyza_canadensis_scaffold:8 | - | View | |
Erigeron canadensis | ECA240G1418 | Conyza_canadensis_scaffold:5 | - | View | |
Olea europaea | Oeu027543.1 | chr18 | + | View | |
Papaver somniferum | PSO832G3058 | NC_039367.1 | + | View | |
Papaver somniferum | PSO170G3262 | NC_039360.1 | - | View | |
Papaver somniferum | PSO170G4798 | NC_039360.1 | - | View | |
Rhododendron simsii | Rhsim01G0069400 | chr01 | - | View | |
Sapria himalayana | SHI12491 | scaffold11_13529635 | + | View | |
Sapria himalayana | SHI22549 | scaffold31_7046607 | + | View | |
Solanum tuberosum | PGSC0003DMG400040243 | Integrase core domain containing protein | ST4.03ch01 | - | View |
Solanum tuberosum | PGSC0003DMG400039178 | Integrase core domain containing protein | ST4.03ch08 | + | View |
Solanum tuberosum | PGSC0003DMG400038460 | Gene of unknown function | ST4.03ch07 | + | View |
Solanum tuberosum | PGSC0003DMG400040452 | Integrase core domain containing protein | ST4.03ch02 | + | View |
Solanum tuberosum | PGSC0003DMG400042025 | Integrase core domain containing protein | ST4.03ch11 | - | View |