Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen05g029970 RNA-binding (RRM/RBD/RNP motifs) family protein | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch05 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G16700 LG-1 + View
Acer truncatum Atru.chr3.1368 chr3 + View
Acer truncatum Atru.chr6.1177 chr6 - View
Actinidia chinensis Actinidia28851 Lachesis_group8 - View
Arabidopsis lyrata AL6G20840 scaffold_6 - View
Arabidopsis lyrata AL8G42820 scaffold_8 - View
Avicennia marina MSTRG.3765 ScioBoG_102836_HRSCAF_103072 + View
Aquilegia oxysepala Aqoxy6G00740 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XUU5QY PTHR24012//PTHR24012:SF436//PTHR36408//PTHR36408:SF1 - FAMILY NOT NAMED // PABPN1 PROTEIN // FAMILY NOT NAMED // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M2T0M7 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) arahy.Tifrunner.gnm1.Arahy.20 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EC9EW7 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) arahy.Tifrunner.gnm1.Arahy.10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A3Z183 PTHR24012//PTHR24012:SF436//PTHR36408 - FAMILY NOT NAMED // PABPN1 PROTEIN // FAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT5G10350 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: protein binding%2C RNA binding%2C poly(A) RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G65260 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC03g18321 ChrC03 - View
Brassica napus A06p32120 A06 - View
Brassica napus C03p60820 C03 + View
Brassica napus A02p43810 A02 - View
Brassica napus C02p63970 C02 - View
Brassica oleracea BolC2t12463H C2 - View
Brassica rapa BraA06t26140Z A06 - View
Brassica rapa BraA02t09305Z A02 - View
Beta vulgaris EL10Ac9g21506 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0049658 unnamed protein product [Coffea canephora] Chr1 + View
Cannabis sativa CANSAT11G2095 NC_044377.1 + View
Cicer arietinum L. Ca_17755_v3 Ca_LG6_v3 - View
Corylus avellana Haze_24870 Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702) 8 + View
Corylus avellana Haze_10594 Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc07_g14780 Polyadenylate-binding protein 2 chr7 + View
Citrus clementina Ciclev10026448m.g scaffold_7 + View
Carpinus fangiana Cfa002621 Cfa01 + View
Cardamine hirsuta CARHR202950 Polyadenylate-binding protein family protein Chr6 + View
Cardamine hirsuta CARHR279210 Polyadenylate-binding protein family protein Chr8 - View
Carya illinoinensis CiPaw.03G144200 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr03 - View
Citrullus lanatus ClCG01G018630 Polyadenylate-binding protein family protein CG_Chr01 + View
Cucumis melo MELO3C007743.2 Polyadenylate-binding 2 chr08 + View
Cucumis melo MELO3C017602.2 Polyadenylate-binding 2 chr07 - View
Corchorus olitorius COL.COLO4_27278 hypothetical protein AWUE01019526.1 - View
Carica papaya Cpa.g.sc55.85 supercontig_55 + View
Chenopodium quinoa AUR62010156 PABN3: Polyadenylate-binding protein 3 C_Quinoa_Scaffold_1257 + View
Chenopodium quinoa AUR62013153 PABN3: Polyadenylate-binding protein 3 C_Quinoa_Scaffold_1040 + View
Capsella rubella Carub.0008s2613 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) scaffold_8 - View
Capsella rubella Carub.0006s0881 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) scaffold_6 - View
Cucumis sativus L. CsaV3_UNG223550 Polyadenylate-binding protein 2 scaffold69 - View
Cucumis sativus L. CsaV3_UNG128990 Polyadenylate-binding protein 2 scaffold66 + View
Cucumis sativus L. CsaV3_6G045300 Polyadenylate-binding protein 2 chr6 + View
Daucus carota DCAR_003497 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv08843 GWHABJS00000021 + View
Davidia involucrata Dinv13217 GWHABJS00000014 + View
Durio zibethinus Duzib132G0232 NW_019167915.1 + View
Durio zibethinus Duzib187G0072 NW_019167860.1 - View
Durio zibethinus Duzib264G0343 NW_019167960.1 - View
Eucalyptus grandis Eucgr.I00520 Chr09 + View
Erythranthe guttata Migut.L00149 scaffold_12 - View
Eutrema salsugineum Thhalv10004890m.g scaffold_6 + View
Eutrema salsugineum Thhalv10014635m.g K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) scaffold_2 - View
Fragaria x ananassa FAN19G2293 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb1-4 + View
Fragaria x ananassa FAN26G0703 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb1-2 + View
Fragaria x ananassa FAN28G0303 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb1-1 - View
Fragaria x ananassa FAN23G3010 Fvb1-3 + View
Fragaria vesca FvH4_1g20430 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb1 + View
Gossypium hirsutum Gohir.A02G128200 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) A02 - View
Gossypium hirsutum Gohir.D03G039700 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) D03 - View
Glycine max Glyma.08G133900 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Gm08 + View
Glycine max Glyma.05G176400 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Gm05 + View
Gossypium raimondii Gorai.003G040800 Chr03 - View
Hydrangea macrophylla Hma1.2p1_0019F.1_g013640 Hma1.2p1_0019F.1 - View
Lupinus albus Lalb_Chr07g0185281 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Lalb_Chr07 - View
Lotus japonicus Lj4g0012561 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) chr4 + View
Lotus japonicus Lj4g0023301 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) chr4 - View
Lonicera japonica Lj4C898G2 GWHAAZE00000004 - View
Lonicera japonica Lj5A235T48 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_5_33860 Lsat_1_v8_lg_5 + View
Malus domestica MD01G1034000 RNA-binding (RRM/RBD/RNP motifs) family protein Chr01 - View
Manihot esculenta Manes.07G034000 Chromosome07 - View
Manihot esculenta Manes.13G095800 Chromosome13 - View
Manihot esculenta Manes.10G105142 Chromosome10 + View
Manihot esculenta Manes.12G131600 Chromosome12 + View
Medicago truncatula Medtr8g089990 polyadenylate-binding protein II chr8 + View
Nelumbo nucifera Nn1g05423 chr1 - View
Nelumbo nucifera Nn5g30032 chr5 + View
Olea europaea Oeu032405.1 chr20 + View
Olea europaea Oeu002166.1 chr14 + View
Punica granatum PGR004G2141 NC_045131.1 - View
Prunus persica Prupe.6G191400 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Pp06 - View
Pisum sativum Psat7g056840 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr7LG7 - View
Papaver somniferum PSO447G0151 NW_020621936.1 - View
Populus trichocarpa Potri.007G095800 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr07 - View
Populus trichocarpa Potri.005G073200 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr05 + View
Phaseolus vulgaris Phvul.002G261500 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr02 + View
Quercus lobata QL06p048439 6 + View
Quercus lobata QL11p022616 11 - View
Rosa chinensis RcHm_v2.0_Chr2g0112681 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim10G0164900 chr10 - View
Striga asiatica SGA_v2.0_scaffold83G26317 scaffold83 + View
Striga asiatica SGA_v2.0_scaffold335G49110 scaffold335 + View
Striga asiatica SGA_v2.0_scaffold14G07133 scaffold14 - View
Salvia bowleyana SalBow5G3912 GWHASIU00000003 - View
Salix brachista Sabra07G0078900 GWHAAZH00000007 - View
Salix brachista Sabra05G0059800 GWHAAZH00000005 + View
Simmondsia chinensis Sc16g0000190 GWHAASQ00000016 + View
Simmondsia chinensis Sc03g0000080 GWHAASQ00000003 + View
Sechium edule Sed0023811 LG10 + View
Sechium edule Sed0017052 LG13 - View
Solanum lycopersicum Solyc11g009090.2 Polyadenylate-binding protein (AHRD V3.3 *** G5DWR4_SILLA) SL4.0ch11 - View
Schrenkiella parvula Sp2g28360 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) ch2-4 - View
Solanum tuberosum PGSC0003DMG400016158 Poly-A binding protein ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400016798 Poly-A binding protein ST4.03ch05 + View
Selenicereus undatus Hund13597 Scaffold_33679 - View
Trochodendron aralioides TAR376G0353 group14 - View
Trochodendron aralioides TAR381G0760 group11 + View
Theobroma cacao Thecc.01G097500 RNA-binding (RRM/RBD/RNP motifs) family protein Chromosome_1 + View
Theobroma cacao Thecc.02G134700 RNA-binding family protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104798864 polyadenylate-binding protein 2 isoform X1 NW_010960188.1 + View
Tarenaya hassleriana THA.LOC104801673 polyadenylate-binding protein 3 NW_010969839.1 - View
Trifolium pratense TPR.G6252 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI59G1039 NC_052248.1 - View
Tripterygium wilfordii TWI74G0657 NC_052234.1 + View
Tripterygium wilfordii TWI77G0568 NC_052236.1 + View
Vaccinium macrocarpon vmacro12967 Similar to PABN3: Polyadenylate-binding protein 3 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G1244 CM024069.1 + View