Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen08g003080 Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). | chloroplast beta-amylase (CT-BMY) | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site , Glycoside hydrolase, family 14 , Glycoside hydrolase, catalytic core , Glycoside hydrolase, family 14B, plant , Glycoside hydrolase, subgroup, catalytic core | BEST Arabidopsis thaliana protein match is: beta-amylase 1 Spenn-ch08 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G13200 LG-2 - View
Acer truncatum Atru.chr9.1148 chr9 + View
Actinidia chinensis Actinidia31484 Lachesis_group20 - View
Actinidia chinensis Actinidia10870 Lachesis_group14 + View
Actinidia chinensis Actinidia03409 Lachesis_group23 - View
Arabidopsis lyrata AL7G37610 scaffold_7 + View
Amaranthus hybridus Ah.12g053820 Beta-amylase 3, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 8) (Chloroplast beta-amylase) (CT-BMY) AmaHy_arrow1_Scaffold_12 + View
Amaranthus hybridus Ah.07g199790 AmaHy_arrow1_Scaffold_7 + View
Aquilegia oxysepala Aqoxy3G02589 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3VMA9Y K01177 - beta-amylase (E3.2.1.2) arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.34GL3D K01177 - beta-amylase (E3.2.1.2) arahy.Tifrunner.gnm1.Arahy.11 + View
Arabidopsis thaliana AT4G17090 chloroplast beta-amylase Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose%2C the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). chloroplast beta-amylase (CT-BMY)%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 14%2C conserved site (InterPro:IPR018238)%2C Glycoside hydrolase%2C family 14 (InterPro:IPR001554)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 14B%2C plant (InterPro:IPR001371)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-amylase 1 (TAIR:AT3G23920.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC09g50442 ChrC09 - View
Brassica carinata BcaNung00125 Contig74 + View
Brassica carinata BcaC07g38038 ChrC07 - View
Brassica carinata BcaC06g33521 ChrC06 + View
Brassica carinata BcaB04g18381 ChrB04 + View
Brassica napus C07p48600 C07 - View
Brassica napus A01p20220 A01 + View
Brassica napus C01p25360 C01 + View
Brassica oleracea BolC8t48434H C8 - View
Brassica oleracea BolC1t02487H C1 + View
Brassica oleracea BolC7t45368H C7 - View
Brassica rapa BraA01t01946Z A01 + View
Brassica rapa BraA03t14120Z A03 - View
Beta vulgaris EL10Ac5g12219 K01177 - beta-amylase (E3.2.1.2) Chr5_EL10_PGA_scaffold2 + View
Camellia sinensis var. sinensis CSS0021642 chloroplast beta-amylase 3 [Camellia sinensis] Chr14 + View
Capsicum annuum CAN.G1445.10 PGAv.1.6.scaffold1445 + View
Cannabis sativa CANSAT21G0399 NC_044374.1 - View
Cicer arietinum L. Ca_24621_v3 Ca_LG8_v3 - View
Cicer arietinum L. Ca_22030_v3 Ca_LG7_v3 - View
Corylus avellana Haze_08335 Similar to BAM3: Beta-amylase 3, chloroplastic (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g01530 Beta-amylase 3, chloroplastic chr8 - View
Citrus clementina Ciclev10019566m.g scaffold_3 + View
Ceratophyllum demersum CDE11G0917 9 + View
Carpinus fangiana Cfa012358 Cfa05 - View
Cardamine hirsuta CARHR223690 Beta-amylase 8 Chr7 - View
Carya illinoinensis CiPaw.12G057100 K01177 - beta-amylase (E3.2.1.2) Chr12 - View
Carya illinoinensis CiPaw.11G085500 K01177 - beta-amylase (E3.2.1.2) Chr11 - View
Citrullus lanatus ClCG10G002060 Beta-amylase CG_Chr10 + View
Cucumis melo MELO3C013887.2 Beta-amylase chr06 + View
Chenopodium quinoa AUR62018803 BAM3: Beta-amylase 3, chloroplastic C_Quinoa_Scaffold_1817 + View
Chenopodium quinoa AUR62007199 BAM3: Beta-amylase 3, chloroplastic C_Quinoa_Scaffold_1971 - View
Capsella rubella Carub.0007s2430 K01177 - beta-amylase (E3.2.1.2) scaffold_7 + View
Cucumis sativus L. CsaV3_3G002150 Beta-amylase chr3 + View
Daucus carota DCAR_005594 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_008311 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv25161 GWHABJS00000017 - View
Durio zibethinus Duzib084G0640 NW_019167827.1 + View
Durio zibethinus Duzib205G0917 NW_019168381.1 + View
Erigeron canadensis ECA246G0917 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.E00330 Chr05 + View
Erythranthe guttata Migut.E00813 scaffold_5 + View
Eutrema salsugineum Thhalv10024842m.g K01177 - beta-amylase (E3.2.1.2) scaffold_1 + View
Fragaria x ananassa FAN04G1175 K01177 - beta-amylase (E3.2.1.2) Fvb5-4 - View
Fragaria x ananassa FAN13G3150 K01177 - beta-amylase (E3.2.1.2) Fvb5-2 - View
Fragaria x ananassa FAN18G4593 K01177 - beta-amylase (E3.2.1.2) Fvb5-1 - View
Fragaria x ananassa FAN08G0064 K01177 - beta-amylase (E3.2.1.2) Fvb5-3 + View
Fragaria vesca FvH4_5g20800 K01177 - beta-amylase (E3.2.1.2) Fvb5 - View
Gossypium hirsutum Gohir.A12G212000 K01177 - beta-amylase (E3.2.1.2) A12 + View
Gossypium hirsutum Gohir.D09G192250 3.2.1.2 - Beta-amylase / Saccharogen amylase D09 - View
Gossypium hirsutum Gohir.D11G028000 K01177 - beta-amylase (E3.2.1.2) D11 - View
Gossypium hirsutum Gohir.D12G214500 K01177 - beta-amylase (E3.2.1.2) D12 + View
Gossypium hirsutum Gohir.A11G029500 K01177 - beta-amylase (E3.2.1.2) A11 - View
Glycine max Glyma.01G203400 K01177 - beta-amylase (E3.2.1.2) Gm01 + View
Glycine max Glyma.05G068000 K01177 - beta-amylase (E3.2.1.2) Gm05 - View
Glycine max Glyma.17G150100 K01177 - beta-amylase (E3.2.1.2) Gm17 - View
Glycine max Glyma.11G039400 K01177 - beta-amylase (E3.2.1.2) Gm11 - View
Gossypium raimondii Gorai.008G230100 Chr08 + View
Gossypium raimondii Gorai.007G030600 Chr07 - View
Gossypium raimondii Gorai.006G215100 Chr06 - View
Helianthus annuus HanXRQChr17g0535671 Probable chloroplast beta-amylase HanXRQChr17 + View
Hydrangea macrophylla Hma1.2p1_0414F.1_g147500 Hma1.2p1_0414F.1 - View
Lupinus albus Lalb_Chr05g0220771 3.2.1.2 - Beta-amylase / Saccharogen amylase Lalb_Chr05 + View
Lupinus albus Lalb_Chr09g0329691 3.2.1.2 - Beta-amylase / Saccharogen amylase Lalb_Chr09 + View
Lupinus albus Lalb_Chr09g0324021 K01177 - beta-amylase (E3.2.1.2) Lalb_Chr09 + View
Lotus japonicus Lj2g0009181 K01177 - beta-amylase (E3.2.1.2) chr2 - View
Lotus japonicus Lj4g0008551 K01177 - beta-amylase (E3.2.1.2) chr4 - View
Lonicera japonica Lj8C286T21 GWHAAZE00000008 - View
Lonicera japonica Lj2A251G51 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_15861 K01177 - beta-amylase (E3.2.1.2) Lsat_1_v8_lg_3 - View
Magnolia biondii MBI04_g20744_MAGBIO AED:0.11 Chr04 + View
Malus domestica MD06G1043900 chloroplast beta-amylase Chr06 + View
Manihot esculenta Manes.15G171200 Chromosome15 + View
Medicago truncatula Medtr4g099110 beta-amylase chr4 + View
Medicago truncatula Medtr5g013620 beta-amylase chr5 - View
Nelumbo nucifera Nn1g00705 chr1 + View
Nicotiana tabacum Nitab4.5_0001255g0010 Glycoside hydrolase, catalytic domain, Glycoside hydrolase, superfamily, Glycoside hydrolase, family 14, Glycoside hydrolase, family 14, conserved site Nitab4.5_0001255 - View
Nicotiana tabacum Nitab4.5_0000185g0250 Glycoside hydrolase, family 14, conserved site, Glycoside hydrolase, family 14B, plant, Glycoside hydrolase, family 14, Glycoside hydrolase, catalytic domain, Glycoside hydrolase, superfamily Nitab4.5_0000185 - View
Olea europaea Oeu054289.1 scaffold664 - View
Petunia axillaris Peaxi162Scf00102g00077 beta-amylase 1 Peaxi162Scf00102 + View
Petunia axillaris Peaxi162Scf00715g00215 beta-amylase 1 Peaxi162Scf00715 - View
Punica granatum PGR042G2339 NC_045130.1 + View
Prunus persica Prupe.5G051000 K01177 - beta-amylase (E3.2.1.2) Pp05 + View
Pisum sativum Psat4g076800 Glycosyl hydrolase family 14 chr4LG4 - View
Papaver somniferum PSO063G2849 NC_039364.1 - View
Populus trichocarpa Potri.001G148900 K01177 - beta-amylase (E3.2.1.2) Chr01 + View
Populus trichocarpa Potri.003G085500 K01177 - beta-amylase (E3.2.1.2) Chr03 - View
Phaseolus vulgaris Phvul.003G226900 K01177 - beta-amylase (E3.2.1.2) Chr03 - View
Quercus lobata QL12p007993 12 + View
Rhododendron simsii Rhsim11G0008700 chr11 - View
Striga asiatica SGA_v2.0_scaffold20G09249 scaffold20 + View
Salix brachista Sabra03G0055500 GWHAAZH00000003 - View
Salix brachista Sabra01G0118900 GWHAAZH00000001 + View
Simmondsia chinensis Sc22g0001240 GWHAASQ00000022 - View
Sechium edule Sed0007991 LG07 - View
Solanum lycopersicum Solyc08g007130.4 Beta-amylase (AHRD V3.3 *** A0A2G3DCL2_CAPCH) SL4.0ch08 + View
Solanum lycopersicum Solyc08g077530.3 Beta-amylase (AHRD V3.3 *** Q94EU9_SOLTU) SL4.0ch08 + View
Schrenkiella parvula Sp7g17080 K01177 - beta-amylase (E3.2.1.2) ch7-4 + View
Solanum tuberosum PGSC0003DMG400001855 Beta-amylase PCT-BMYI ST4.03ch08 + View
Solanum tuberosum PGSC0003DMG402020509 Beta-amylase PCT-BMYI ST4.03ch08 - View
Selenicereus undatus Hund11299 Scaffold_10417 + View
Selenicereus undatus Hund14466 Scaffold_33677 + View
Trochodendron aralioides TAR636G3409 group1 - View
Trochodendron aralioides TAR375G1147 group15 + View
Theobroma cacao Thecc.03G237100 Chloroplast beta-amylase Chromosome_3 + View
Tarenaya hassleriana THA.LOC104807939 beta-amylase 3%2C chloroplastic-like NW_010963717.1 - View
Tripterygium wilfordii TWI60G0995 NC_052246.1 + View
Tripterygium wilfordii TWI81G0700 NC_052251.1 - View
Utricularia gibba unitig_21.g20372 unitig_21 - View
Vaccinium macrocarpon vmacro00377 Similar to BAM3: Beta-amylase 3, chloroplastic (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G3331 CM024069.1 - View
Vigna mungo VMungo1215G1094 CM024074.1 - View
Vanilla planifolia HPP92_014645 Beta-amylase *** CM028156.1 - View
Vitis vinifera GSVIVG01013272001 chr2 - View
Zea mays Zm00001eb390820 Zm00001e037830 Beta-amylase Beta-amylase 3 chloroplastic 9 + View