Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g033550 RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | RUB1 conjugating enzyme 1 (RCE1) | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like , Ubiquitin-conjugating enzyme, E2 , RUB1 conjugating enzyme Ubc12 | BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein Spenn-ch04 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G13610 LG-6 - View
Acer truncatum Atru.chr5.2950 chr5 + View
Acer truncatum Atru.chr3.514 chr3 + View
Actinidia chinensis Actinidia12107 Lachesis_group11 + View
Arabidopsis lyrata AL7G14200 scaffold_7 + View
Arabidopsis lyrata AL3G51960 scaffold_3 - View
Amaranthus hybridus Ah.01g019610 NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy5G01695 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.G3NDLZ K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) arahy.Tifrunner.gnm1.Arahy.15 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L08NWK K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT2G18600 Ubiquitin-conjugating enzyme family protein Ubiquitin-conjugating enzyme family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C small conjugating protein ligase activity%2C acid-amino acid ligase activity%2C ATP binding%3B INVOLVED IN: regulation of protein metabolic process%2C protein modification process%2C post-translational protein modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%2C RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580)%3B BEST Arabidopsis thaliana protein match is: RUB1 conjugating enzyme 1 (TAIR:AT4G36800.2)%3B Has 8339 Blast hits to 8336 proteins in 387 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 3796%3B Fungi - 1734%3B Plants - 1481%3B Viruses - 20%3B Other Eukaryotes - 1306 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT4G36800 RUB1 conjugating enzyme 1 RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1%2C which may be the E3 for CUL1. RUB1 conjugating enzyme 1 (RCE1)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%2C RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1)%3B Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3871%3B Fungi - 1731%3B Plants - 1533%3B Viruses - 20%3B Other Eukaryotes - 1318 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC01g00439 ChrC01 + View
Brassica napus A01p02100 A01 + View
Brassica napus C07p61970 C07 - View
Brassica napus C03p79850 C03 + View
Brassica napus C01p02280 C01 + View
Brassica napus A08p22410 A08 - View
Brassica napus C09p14130 C09 - View
Brassica oleracea BolC9t54310H C9 - View
Brassica oleracea BolC3t20237H C3 + View
Brassica rapa BraA08t34198Z A08 - View
Brassica rapa BraA01t00199Z A01 + View
Beta vulgaris EL10Ac9g21753 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0010786 PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Fragaria vesca subsp. vesca] Chr3 - View
Camellia sinensis var. sinensis CSS0026151 ubiquitin-conjugating enzyme m, putative [Ricinus communis] Chr2 + View
Camellia sinensis var. sinensis CSS0024719 hypothetical protein CISIN_1g031839mg [Citrus sinensis] Chr9 - View
Capsicum annuum CAN.G358.131 PGAv.1.6.scaffold358 - View
Capsicum annuum CAN.G1126.21 PGAv.1.6.scaffold1126 + View
Cannabis sativa CANSAT01G1733 NC_044373.1 + View
Cicer arietinum L. Ca_24833_v3 Ca_LG8_v3 + View
Corylus avellana Haze_15133 Similar to RCE1: NEDD8-conjugating enzyme Ubc12 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc10_g03300 NEDD8-conjugating enzyme Ubc12 chr10 - View
Citrus clementina Ciclev10027386m.g scaffold_7 - View
Citrus clementina Ciclev10029365m.g scaffold_8 + View
Carpinus fangiana Cfa004268 Cfa01 + View
Cardamine hirsuta CARHR245160 Ubiquitin-conjugating enzyme m, putative Chr7 - View
Cardamine hirsuta CARHR109200 Ubiquitin-conjugating enzyme family protein Chr3 - View
Carya illinoinensis CiPaw.01G033700 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr01 + View
Carya illinoinensis CiPaw.05G061400 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr05 + View
Carica papaya Cpa.g.sc158.15 supercontig_158 - View
Capsella rubella Carub.0007s0352 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) scaffold_7 + View
Capsella rubella Carub.0003s3287 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) scaffold_3 - View
Davidia involucrata Dinv39948 GWHABJS00000014 - View
Davidia involucrata Dinv39386 GWHABJS00000011 + View
Davidia involucrata Dinv23552 GWHABJS00000005 - View
Durio zibethinus Duzib147G0867 NW_019168470.1 + View
Durio zibethinus Duzib264G0069 NW_019167960.1 + View
Erigeron canadensis ECA238G4497 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.H01237 Chr08 - View
Eutrema salsugineum Thhalv10022872m.g K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) scaffold_11 + View
Eutrema salsugineum Thhalv10027340m.g K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) scaffold_1 + View
Fragaria x ananassa FAN26G1211 PTHR24067:SF123 - NEDD8-CONJUGATING ENZYME UBC12-RELATED Fvb1-2 - View
Fragaria x ananassa FAN23G2132 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Fvb1-3 + View
Fragaria x ananassa FAN19G0268 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Fvb1-4 - View
Fragaria x ananassa FAN20G1282 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Fvb2-3 + View
Fragaria vesca FvH4_2g40180 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Fvb2 - View
Fragaria vesca FvH4_1g14060 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Fvb1 - View
Gossypium hirsutum Gohir.D11G193200 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) D11 - View
Gossypium hirsutum Gohir.A12G066000 PTHR24067:SF123 - NEDD8-CONJUGATING ENZYME UBC12-RELATED A12 - View
Gossypium hirsutum Gohir.A02G163566 PTHR24067:SF123 - NEDD8-CONJUGATING ENZYME UBC12-RELATED A02 + View
Gossypium hirsutum Gohir.D12G066400 PTHR24067:SF123 - NEDD8-CONJUGATING ENZYME UBC12-RELATED D12 - View
Gossypium hirsutum Gohir.A11G186700 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) A11 - View
Glycine max Glyma.01G178200 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Gm01 - View
Glycine max Glyma.02G058950 PTHR24067:SF123 - NEDD8-CONJUGATING ENZYME UBC12-RELATED Gm02 - View
Glycine max Glyma.11G064000 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Gm11 + View
Gossypium raimondii Gorai.007G206300 Chr07 - View
Gossypium raimondii Gorai.008G069700 Chr08 - View
Helianthus annuus HanXRQChr09g0268491 Putative ubiquitin-conjugating enzyme/RWD-like; Ubiquitin-conjugating enzyme, active site HanXRQChr09 + View
Helianthus annuus HanXRQChr14g0440941 Putative ubiquitin-conjugating enzyme/RWD-like; Ubiquitin-conjugating enzyme, active site HanXRQChr14 - View
Lupinus albus Lalb_Chr05g0212991 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Lalb_Chr05 - View
Lupinus albus Lalb_Chr09g0333621 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Lalb_Chr09 - View
Lotus japonicus Lj2g0017765 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) chr2 + View
Lotus japonicus Lj2g0023058 PTHR31269:SF2 - S-TYPE ANION CHANNEL SLAH2-RELATED chr2 + View
Lonicera japonica Lj4A195T61 GWHAAZE00000004 + View
Magnolia biondii MBI16_g28234_MAGBIO AED:0.31 Chr16 - View
Malus domestica MD08G1035500 RUB1 conjugating enzyme 1 Chr08 - View
Malus domestica MD15G1268600 RUB1 conjugating enzyme 1 Chr15 - View
Malus domestica MD02G1154200 RUB1 conjugating enzyme 1 Chr02 - View
Manihot esculenta Manes.13G136300 Chromosome13 + View
Medicago truncatula Medtr5g019480 ubiquitin-conjugating enzyme chr5 + View
Nelumbo nucifera Nn5g29509 chr5 + View
Nicotiana tabacum Nitab4.5_0000110g0290 Ubiquitin-conjugating enzyme/RWD-like, Ubiquitin-conjugating enzyme, active site, Ubiquitin-conjugating enzyme, E2 Nitab4.5_0000110 + View
Nicotiana tabacum Nitab4.5_0004118g0060 Ubiquitin-conjugating enzyme, E2, Ubiquitin-conjugating enzyme, active site, Ubiquitin-conjugating enzyme/RWD-like Nitab4.5_0004118 - View
Olea europaea Oeu035113.1 chr10 - View
Petunia axillaris Peaxi162Scf01327g00022 NEDD8-conjugating enzyme Ubc12 Peaxi162Scf01327 - View
Prunus persica Prupe.7G148800 Pp07 + View
Prunus persica Prupe.1G383000 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Pp01 - View
Pisum sativum Psat2g162160 Ubiquitin-conjugating enzyme chr2LG1 - View
Papaver somniferum PSO675G5328 NC_039358.1 + View
Populus trichocarpa Potri.009G113045 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr09 + View
Populus trichocarpa Potri.005G126500 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr05 - View
Populus trichocarpa Potri.007G030900 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr07 - View
Phaseolus vulgaris Phvul.003G251600 Chr03 + View
Phaseolus vulgaris Phvul.002G026500 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) Chr02 + View
Quercus lobata QL06p045000 6 + View
Salix brachista Sabra05G0104000 GWHAAZH00000005 - View
Salix brachista Sabra09G0086300 GWHAAZH00000009 + View
Salix brachista Sabra07G0026700 GWHAAZH00000007 - View
Solanum lycopersicum Solyc04g079970.3 RUB1 conjugating enzyme SL4.0ch04 + View
Solanum lycopersicum Solyc02g085690.4 Ubiquitin-conjugating enzyme (AHRD V3.3 *** A0A200R7K5_9MAGN) SL4.0ch02 - View
Schrenkiella parvula Sp3g32100 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) ch3-6 - View
Schrenkiella parvula Sp7g34460 K10579 - ubiquitin-conjugating enzyme E2 M (UBE2M, UBC12) ch7-6 - View
Solanum tuberosum PGSC0003DMG400012657 Ubiquitin carrier protein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400027848 Ubiquitin carrier protein ST4.03ch04 + View
Trochodendron aralioides TAR628G0354 group5 + View
Trochodendron aralioides TAR625G1322 group4 - View
Trochodendron aralioides TAR381G1641 group11 + View
Theobroma cacao Thecc.01G041500 RUB1 conjugating enzyme 1 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104819806 NEDD8-conjugating enzyme Ubc12-like isoform X1 NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104807554 NEDD8-conjugating enzyme Ubc12 NW_010963495.1 - View
Tripterygium wilfordii TWI09G1187 NC_052245.1 + View
Tripterygium wilfordii TWI53G1001 NC_052244.1 + View
Vaccinium macrocarpon vmacro02135 Similar to RCE1: NEDD8-conjugating enzyme Ubc12 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G1967 CM024069.1 + View
Vigna mungo VMungo1215G0037 CM024074.1 + View
Vitis vinifera GSVIVG01019018001 chr4 - View
Vitis vinifera GSVIVG01009655001 chr18 + View