Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc04g009980.4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (AHRD V3.3 *** A0A2G3CE82_CAPCH) SL4.0ch04 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G14950 LG-5 - View
Acer truncatum Atru.chr2.970 chr2 + View
Acer truncatum Atru.chr4.2049 chr4 - View
Actinidia chinensis Actinidia34751 Lachesis_group6 + View
Arabidopsis lyrata AL3G14520 scaffold_3 - View
Aquilegia oxysepala Aqoxy2G03660 CHR02 + View
Aquilegia oxysepala Aqoxy5G00218 CHR05 - View
Arabidopsis thaliana AT3G04510 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G28490.1)%3B Has 309 Blast hits to 309 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 12%3B Fungi - 0%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr3 - View
Brassica napus A05p42960 A05 + View
Capsicum annuum CAN.G1465.6 PGAv.1.6.scaffold1465 + View
Cannabis sativa CANSAT54G0564 NC_044375.1 - View
Corylus avellana Haze_04436 Similar to LSH1: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc02_g08880 Protein of unknown function (DUF640) chr2 + View
Citrus clementina Ciclev10022288m.g scaffold_3 - View
Citrus clementina Ciclev10005901m.g scaffold_9 + View
Carpinus fangiana Cfa006345 Cfa02 + View
Cardamine hirsuta CARHR078700 Protein of unknown function (DUF640) Chr3 - View
Cucumis melo MELO3C006417.2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 chr06 - View
Capsella rubella Carub.0003s0367 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED scaffold_3 - View
Cucumis sativus L. CsaV3_3G012030 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like chr3 - View
Durio zibethinus Duzib177G0319 NW_019168004.1 - View
Durio zibethinus Duzib128G0347 NW_019168481.1 + View
Eucalyptus grandis Eucgr.H04235 Chr08 - View
Eucalyptus grandis Eucgr.B02146 Chr02 + View
Fragaria x ananassa FAN05G4493 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Fvb6-3 - View
Fragaria x ananassa FAN09G0810 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-2 + View
Fragaria x ananassa FAN14G0668 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-1 + View
Gossypium hirsutum Gohir.D13G173100 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED D13 - View
Gossypium hirsutum Gohir.A13G167700 PF04852 - Protein of unknown function (DUF640) (DUF640) A13 - View
Gossypium hirsutum Gohir.D10G201750 PF04852 - Protein of unknown function (DUF640) (DUF640) D10 + View
Glycine max Glyma.10G166100 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm10 + View
Glycine max Glyma.19G248300 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm19 + View
Glycine max Glyma.20G223100 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm20 - View
Gossypium raimondii Gorai.013G187500 Chr13 + View
Gossypium raimondii Gorai.011G226500 Chr11 + View
Gossypium raimondii Gorai.007G276300 Chr07 - View
Lupinus albus Lalb_Chr17g0345291 PTHR31165//PTHR31165:SF6 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Lalb_Chr17 + View
Lotus japonicus Lj5g0023611 PF04852 - Protein of unknown function (DUF640) (DUF640) chr5 - View
Lonicera japonica Lj2C41T7 GWHAAZE00000002 + View
Malus domestica MD04G1229700 Protein of unknown function (DUF640) Chr04 + View
Manihot esculenta Manes.08G139300 Chromosome08 + View
Manihot esculenta Manes.09G148200 Chromosome09 - View
Medicago truncatula Medtr1g080210 light-dependent short hypocotyls protein chr1 + View
Nicotiana tabacum Nitab4.5_0001372g0050 Domain of unknown function DUF640 Nitab4.5_0001372 - View
Nicotiana tabacum Nitab4.5_0000687g0020 Domain of unknown function DUF640 Nitab4.5_0000687 - View
Oryza sativa ssp. japonica Os02g0623400 Similar to G1-like protein. chr02 - View
Petunia axillaris Peaxi162Scf00015g03113 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 Peaxi162Scf00015 - View
Punica granatum PGR004G2033 NC_045131.1 + View
Prunus persica Prupe.6G349800 PF04852 - Protein of unknown function (DUF640) (DUF640) Pp06 + View
Populus trichocarpa Potri.019G018600 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr19 + View
Populus trichocarpa Potri.013G046500 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr13 + View
Phaseolus vulgaris Phvul.006G105500 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr06 + View
Quercus lobata QL03p030755 3 - View
Rosa chinensis RcHm_v2.0_Chr3g0449731 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim09G0137300 chr09 + View
Salix brachista Sabra13G0042600 GWHAAZH00000013 + View
Salix brachista Sabra08G0127800 GWHAAZH00000008 + View
Schrenkiella parvula Sp3g03360 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED ch3-1 - View
Solanum pennellii Sopen05g033480 Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. | LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch05 - View
Solanum pennellii Sopen04g005110 LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400023406 Light-dependent short hypocotyls 1 ST4.03ch05 - View
Trochodendron aralioides TAR362G0865 group17 + View
Trochodendron aralioides TAR365G0386 group16 - View
Trochodendron aralioides TAR633G1028 group2 - View
Theobroma cacao Thecc.05G271300 Uncharacterized protein Chromosome_5 - View
Vaccinium macrocarpon vmacro10362 Similar to LSH2: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G2067 CM024075.1 - View
Vitis vinifera GSVIVG01023521001 chr14 + View