Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc03g114360.4 Poly polymerase (AHRD V3.3 *** A0A2I4EPD4_9ROSI) SL4.0ch03 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G10500 LG-4 + View
Aethionema arabicum Aa31LG7G7600 LG-7 + View
Acer truncatum Atru.chr11.2038 chr11 - View
Acer truncatum Atru.chr9.2478 chr9 - View
Actinidia chinensis Actinidia19321 Lachesis_group1 + View
Actinidia chinensis Actinidia01703 Lachesis_group10 + View
Arabidopsis lyrata AL1G37310 scaffold_1 + View
Arabidopsis lyrata AL2G29810 scaffold_2 - View
Avicennia marina MSTRG.590 ScioBoG_102831_HRSCAF_103044 - View
Aquilegia oxysepala Aqoxy3G01040 CHR03 - View
Arabidopsis thaliana AT1G23550 similar to RCD one 2 Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD one 2 (SRO2)%3B FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase%2C catalytic domain (InterPro:IPR012317)%2C RST domain of plant C-terminal (InterPro:IPR022003)%3B BEST Arabidopsis thaliana protein match is: similar to RCD one 3 (TAIR:AT1G70440.1)%3B Has 178 Blast hits to 169 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 13%3B Fungi - 0%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G70440 similar to RCD one 3 Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD one 3 (SRO3)%3B FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: RST domain of plant C-terminal (InterPro:IPR022003)%2C Poly(ADP-ribose) polymerase%2C catalytic domain (InterPro:IPR012317)%3B BEST Arabidopsis thaliana protein match is: similar to RCD one 2 (TAIR:AT1G23550.1)%3B Has 176 Blast hits to 165 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 161%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g46487 ChrC08 - View
Brassica carinata BcaB03g14803 ChrB03 - View
Brassica napus A07p36820 A07 - View
Brassica napus A09p41120 A09 - View
Brassica napus C05p22890 C05 + View
Brassica napus C06p44300 C06 - View
Brassica oleracea BolC6t39500H C6 - View
Brassica oleracea BolC5t30987H C5 + View
Brassica rapa BraA09t39605Z A09 - View
Beta vulgaris EL10Ac5g10744 PTHR32263:SF6 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Chr5_EL10_PGA_scaffold2 + View
Camellia sinensis var. sinensis CSS0017926 hypothetical protein PRUPE_ppa007712mg [Prunus persica] Chr15 + View
Camellia sinensis var. sinensis CSS0018742 PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 [Prunus mume] Chr6 + View
Corylus avellana Haze_12186 Similar to SRO2: Probable inactive poly polymerase SRO2 (Arabidopsis thaliana OX%3D3702) 9 - View
Citrus clementina Ciclev10020868m.g scaffold_3 - View
Citrus clementina Ciclev10032827m.g scaffold_4 + View
Carpinus fangiana Cfa009153 Cfa03 - View
Cardamine hirsuta CARHR063610 similar to RCD one 3 Chr2 - View
Cardamine hirsuta CARHR023980 similar to RCD one 2 Chr1 + View
Carya illinoinensis CiPaw.11G026200 PTHR32263//PTHR32263:SF6 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Chr11 + View
Capsella rubella Carub.0001s2309 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED scaffold_1 + View
Capsella rubella Carub.0002s1713 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED scaffold_2 - View
Daucus carota DCAR_026135 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv24842 GWHABJS00000018 + View
Davidia involucrata Dinv20653 GWHABJS00000006 - View
Durio zibethinus Duzib248G1483 NW_019168048.1 + View
Durio zibethinus Duzib268G0466 NW_019168270.1 - View
Erigeron canadensis ECA232G4399 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA233G4153 Conyza_canadensis_scaffold:1 - View
Eutrema salsugineum Thhalv10019788m.g PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED scaffold_9 + View
Eutrema salsugineum Thhalv10008227m.g PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED scaffold_5 - View
Fragaria x ananassa FAN07G2140 PTHR32263//PTHR32263:SF8 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Fvb4-4 - View
Fragaria x ananassa FAN17G1730 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Fvb4-2 - View
Fragaria x ananassa FAN12G1661 PTHR32263//PTHR32263:SF8 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Fvb4-3 + View
Fragaria x ananassa FAN22G0184 PTHR32263//PTHR32263:SF8 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Fvb4-1 + View
Fragaria x ananassa FAN13G2823 Fvb5-2 - View
Fragaria vesca FvH4_4g34350 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Fvb4 + View
Gossypium hirsutum Gohir.A12G142900 PF12174 - RCD1-SRO-TAF4 (RST) plant domain (RST) A12 - View
Gossypium hirsutum Gohir.D12G147700 PF12174 - RCD1-SRO-TAF4 (RST) plant domain (RST) D12 - View
Glycine max Glyma.04G183100 PTHR32263:SF6 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Gm04 + View
Gossypium raimondii Gorai.008G158900 Chr08 - View
Lotus japonicus Lj4g0011780 PTHR32263//PTHR32263:SF6 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED chr4 - View
Lonicera japonica Lj3A1053T42 GWHAAZE00000003 - View
Magnolia biondii MBI16_g27099_MAGBIO AED:0.11 Chr16 + View
Malus domestica MD06G1173800 similar to RCD one 5 Chr06 + View
Malus domestica MD14G1180300 similar to RCD one 5 Chr14 + View
Malus domestica MD13G1092800 similar to RCD one 2 Chr13 - View
Malus domestica MD16G1093700 similar to RCD one 2 Chr16 - View
Manihot esculenta Manes.13G029600 Chromosome13 + View
Medicago truncatula Medtr3g077870 inactive poly [ADP-ribose] polymerase SRO4 chr3 + View
Nelumbo nucifera Nn3g16865 chr3 - View
Nicotiana tabacum Nitab4.5_0000203g0240 Poly(ADP-ribose) polymerase, catalytic domain, RST domain of plant C-terminal Nitab4.5_0000203 + View
Olea europaea Oeu056405.1 chr12 + View
Petunia axillaris Peaxi162Scf00710g00414 RCD one 5, putative isoform 2 Peaxi162Scf00710 + View
Prunus persica Prupe.5G173700 PTHR32263:SF6 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Pp05 + View
Prunus persica Prupe.1G252800 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED Pp01 + View
Populus trichocarpa Potri.012G081100 PTHR32263:SF6 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Chr12 - View
Phaseolus vulgaris Phvul.009G178500 PTHR32263:SF6 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED Chr09 + View
Rosa chinensis RcHm_v2.0_Chr4g0443761 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim12G0118200 chr12 + View
Rhododendron simsii Rhsim12G0044600 chr12 + View
Salvia bowleyana SalBow2G2071 GWHASIU00000007 + View
Salix brachista Sabra15G0101600 GWHAAZH00000015 - View
Sechium edule Sed0021647 LG03 + View
Schrenkiella parvula Sp5g25520 PTHR32263//PTHR32263:SF8 - FAMILY NOT NAMED // INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED ch5-6 - View
Schrenkiella parvula Sp1g20990 PTHR32263:SF8 - INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED ch1-1 + View
Solanum pennellii Sopen03g033460 Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. | similar to RCD one 5 (SRO5) | FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity | INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress | LOCATED IN: mitochondrion | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain | BEST Arabidopsis thaliana protein match is: similar to RCD one 4 Spenn-ch03 - View
Solanum pennellii Sopen05g001280 Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. | similar to RCD one 2 (SRO2) | FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity | INVOLVED IN: biological_process unknown | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain , RST domain of plant C-terminal | BEST Arabidopsis thaliana protein match is: similar to RCD one 3 Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG400024600 Conserved gene of unknown function ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400013476 Conserved gene of unknown function ST4.03ch05 + View
Trochodendron aralioides TAR629G2674 group0 - View
Trochodendron aralioides TAR374G0978 group12 - View
Trochodendron aralioides TAR622G1404 group8 - View
Trochodendron aralioides TAR371G0407 group13 + View
Theobroma cacao Thecc.02G251100 RCD one 2 Chromosome_2 - View
Theobroma cacao Thecc.03G012700 RCD one 5 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104822148 probable inactive poly [ADP-ribose] polymerase SRO2 NW_010966617.1 - View
Vaccinium macrocarpon vmacro16246 Similar to SRO2: Probable inactive poly polymerase SRO2 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro01167 Similar to SRO2: Probable inactive poly polymerase SRO2 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01013740001 chr1 + View