Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G5080 LG-7 + View
Acer truncatum Atru.chr13.1986 chr13 + View
Actinidia chinensis Actinidia17765 Lachesis_group26 + View
Arabidopsis lyrata AL1G33940 scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HEZ0TZ PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QL8U34 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT1G20920 P-loop containing nucleoside triphosphate hydrolases superfamily protein P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB01g02777 ChrB01 - View
Brassica carinata BcaC01g04703 ChrC01 - View
Brassica napus A06p16920 A06 + View
Brassica oleracea BolC3t15783H C3 + View
Brassica rapa BraA03t12071Z A03 + View
Brassica rapa BraA06t24801Z A06 + View
Camellia sinensis var. sinensis CSS0037207 unnamed protein product [Vitis vinifera] Chr4 + View
Cannabis sativa CANSAT25G1247 NC_044370.1 + View
Corylus avellana Haze_17822 Similar to RH39: DEAD-box ATP-dependent RNA helicase 39 (Arabidopsis thaliana OX%3D3702) 7 - View
Coffea canephora Cc10_g06460 DEAD-box ATP-dependent RNA helicase 39 chr10 + View
Citrus clementina Ciclev10000567m.g scaffold_5 - View
Carpinus fangiana Cfa018266 Cfa07 + View
Carya illinoinensis CiPaw.16G007700 PF00270//PF00658 - DEAD/DEAH box helicase (DEAD) // Poly-adenylate binding protein, unique domain (PABP) Chr16 + View
Citrullus lanatus ClCG08G007240 ATP-dependent RNA helicase CG_Chr08 + View
Cucumis melo MELO3C019967.2 DEAD-box ATP-dependent RNA helicase 39-like chr03 - View
Carica papaya Cpa.g.sc26.115 supercontig_26 - View
Chenopodium quinoa AUR62026620 Os01g0184500: DEAD-box ATP-dependent RNA helicase 39 C_Quinoa_Scaffold_2081 + View
Chenopodium quinoa AUR62034909 Os01g0184500: DEAD-box ATP-dependent RNA helicase 39 C_Quinoa_Scaffold_3617 - View
Capsella rubella Carub.0001s2039 scaffold_1 + View
Capsella rubella Carub.0002s2395 K14808 - ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] (DDX54, DBP10) scaffold_2 - View
Cucumis sativus L. CsaV3_6G004910 DEAD-box ATP-dependent RNA helicase 39-like chr6 + View
Daucus carota DCAR_001196 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv41025 GWHABJS00000002 - View
Durio zibethinus Duzib041G0379 NW_019167826.1 - View
Durio zibethinus Duzib093G0808 NW_019167937.1 - View
Erigeron canadensis ECA246G1482 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.F02677 Chr06 + View
Erythranthe guttata Migut.N02946 scaffold_14 + View
Fragaria x ananassa FAN27G1745 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Fvb2-1 + View
Fragaria x ananassa FAN20G1039 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Fvb2-3 - View
Fragaria x ananassa FAN24G2730 PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Fvb2-2 - View
Fragaria x ananassa FAN15G2479 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Fvb2-4 + View
Fragaria vesca FvH4_2g12870 PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Fvb2 + View
Gossypium hirsutum Gohir.A06G112100 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 A06 - View
Gossypium hirsutum Gohir.D06G116300 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 D06 - View
Glycine max Glyma.02G077700 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Gm02 + View
Glycine max Glyma.16G160900 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Gm16 + View
Gossypium raimondii Gorai.010G134100 Chr10 - View
Helianthus annuus HanXRQChr05g0162511 Probable RH39 HanXRQChr05 - View
Helianthus annuus HanXRQChr10g0278691 Putative RNA helicase, DEAD-box type, Q motif; DEAD/DEAH-box helicase, putative, actinobacteria; P-loop containing nucleoside triphosphate hydrolase HanXRQChr10 - View
Lupinus albus Lalb_Chr03g0035691 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Lalb_Chr03 - View
Lotus japonicus Lj2g0014148 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 chr2 - View
Lactuca sativa Lsat_1_v5_gn_5_186120 Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_6_100040 PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Lsat_1_v8_lg_6 - View
Malus domestica MD05G1035500 RH39 Chr05 - View
Malus domestica MD10G1037800 RH39 Chr10 - View
Manihot esculenta Manes.02G184400 Chromosome02 - View
Manihot esculenta Manes.02G198800 Chromosome02 + View
Nicotiana tabacum Nitab4.5_0000872g0170 Helicase, superfamily 1/2, ATP-binding domain, RNA helicase, DEAD-box type, Q motif, Helicase, C-terminal, P-loop containing nucleoside triphosphate hydrolase, DNA/RNA helicase, DEAD/DEAH box type, N-terminal Nitab4.5_0000872 - View
Olea europaea Oeu061450.1 chr7 - View
Punica granatum PGR042G3566 NC_045130.1 + View
Prunus persica Prupe.8G029000 K12858 - ATP-dependent RNA helicase DDX23/PRP28 (DDX23, PRP28) Pp08 + View
Prunus persica Prupe.8G043300 PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Pp08 - View
Papaver somniferum PSO170G0822 NC_039360.1 - View
Papaver somniferum PSO210G4221 NC_039359.1 - View
Populus trichocarpa Potri.005G198300 PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 Chr05 - View
Quercus lobata QL02p036546 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr6g0273971 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim06G0092900 chr06 - View
Salvia bowleyana SalBow6G5316 GWHASIU00000002 - View
Salix brachista Sabra05G0151000 GWHAAZH00000005 - View
Sapria himalayana SHI09105 scaffold9_16683904 - View
Solanum lycopersicum Solyc12g056740.2 RNA helicase DEAD39 SL4.0ch12 - View
Schrenkiella parvula Sp6g07880 PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 ch6-2 - View
Solanum pennellii Sopen12g029410 Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. | RH39 (RH39) | FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity | INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing | LOCATED IN: chloroplast | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein Spenn-ch12 - View
Solanum tuberosum PGSC0003DMG400023195 DEAD-box ATP-dependent RNA helicase 39 ST4.03ch12 - View
Selenicereus undatus Hund26675 Scaffold_2055 + View
Trochodendron aralioides TAR628G1513 group5 - View
Theobroma cacao Thecc.08G162500 DEAD-box ATP-dependent RNA helicase 39 Chromosome_8 - View
Tarenaya hassleriana THA.LOC104813731 DEAD-box ATP-dependent RNA helicase 42-like NW_010965373.1 - View
Tarenaya hassleriana THA.LOC104806769 DEAD-box ATP-dependent RNA helicase 39 NW_010962392.1 - View
Trifolium pratense TPR.G6541 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI34G1590 NC_052235.1 - View
Vitis vinifera GSVIVG01013702001 chr18_random + View