Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sabra01G0140200 GWHAAZH00000001 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1220 LG-8 + View
Acer truncatum Atru.chr1.3900 chr1 - View
Actinidia chinensis Actinidia32174 Lachesis_group27 - View
Actinidia chinensis Actinidia39089 Lachesis_group9 + View
Arabidopsis lyrata AL3G26210 scaffold_3 + View
Arabidopsis lyrata AL1G62890 scaffold_1 - View
Avicennia marina MSTRG.9512 ScioBoG_12795_HRSCAF_12848 - View
Aquilegia oxysepala Aqoxy7G01099 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.THNB81 KOG2375 - Protein interacting with poly(A)-binding protein arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7TGU71 KOG2375 - Protein interacting with poly(A)-binding protein arahy.Tifrunner.gnm1.Arahy.19 + View
Arabidopsis thaliana AT1G54170 CTC-interacting domain 3 ataxin-2-related%2C similar to SCA2 (GI:1770390) (Homo sapiens)%3B similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. CTC-interacting domain 3 (CID3)%3B CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 4 (TAIR:AT3G14010.3)%3B Has 939 Blast hits to 759 proteins in 220 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 423%3B Fungi - 216%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 149 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G14010 CTC-interacting domain 4 hydroxyproline-rich glycoprotein family protein%2C similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae)%3B weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. CTC-interacting domain 4 (CID4)%3B CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1)%3B Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9%3B Bacteria - 1476%3B Metazoa - 3492%3B Fungi - 1698%3B Plants - 664%3B Viruses - 94%3B Other Eukaryotes - 5733 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC08g43597 ChrC08 - View
Brassica carinata BcaB06g25410 ChrB06 - View
Brassica napus A01p39610 A01 - View
Brassica napus A06p00490 A06 + View
Brassica napus C06p09950 C06 - View
Brassica napus C01p50550 C01 - View
Brassica oleracea BolC6t36068H C6 - View
Brassica oleracea BolC1t05006H C1 - View
Brassica rapa BraA01t04001Z A01 - View
Brassica rapa BraA06t23264Z A06 + View
Camellia sinensis var. sinensis CSS0016093 PREDICTED: polyadenylate-binding protein-interacting protein 4 isoform X1 [Vitis vinifera] Chr15 + View
Capsicum annuum CAN.G862.25 PGAv.1.6.scaffold862 - View
Cannabis sativa CANSAT56G4312 NC_044371.1 - View
Corylus avellana Haze_16008 Similar to CID3: Polyadenylate-binding protein-interacting protein 3 (Arabidopsis thaliana OX%3D3702) 11 - View
Citrus clementina Ciclev10025086m.g scaffold_7 - View
Ceratophyllum demersum CDE06G0734 4 - View
Ceratophyllum demersum CDE07G0771 5 - View
Carpinus fangiana Cfa003546 Cfa01 + View
Cardamine hirsuta CARHR044520 Ctc-interacting domain 3 Chr1 - View
Cardamine hirsuta CARHR088820 CTC-interacting domain 4 protein Chr3 + View
Carya illinoinensis CiPaw.02G137000 KOG2375 - Protein interacting with poly(A)-binding protein Chr02 + View
Carya illinoinensis CiPaw.01G221000 KOG2375 - Protein interacting with poly(A)-binding protein Chr01 + View
Cucumis melo MELO3C025813.2 Polyadenylate-binding protein-interacting protein 3 chr04 - View
Carica papaya Cpa.g.sc25.97 supercontig_25 - View
Capsella rubella Carub.0001s4341 KOG2375 - Protein interacting with poly(A)-binding protein scaffold_1 - View
Cucumis sativus L. CsaV3_3G043570 polyadenylate-binding protein-interacting protein 3 isoform X1 chr3 + View
Daucus carota DCAR_016132 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv37877 GWHABJS00000006 - View
Davidia involucrata Dinv04023 GWHABJS00000019 - View
Durio zibethinus Duzib192G0343 NW_019168037.1 + View
Durio zibethinus Duzib235G0409 NW_019167982.1 - View
Erigeron canadensis ECA234G2908 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.F03170 Chr06 - View
Erythranthe guttata Migut.D00945 scaffold_4 + View
Eutrema salsugineum Thhalv10011331m.g PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) scaffold_7 + View
Eutrema salsugineum Thhalv10020519m.g PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) scaffold_13 - View
Fragaria x ananassa FAN05G2950 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-3 + View
Fragaria x ananassa FAN02G3680 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-4 - View
Fragaria x ananassa FAN09G4047 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-2 + View
Fragaria vesca FvH4_6g34380 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6 - View
Gossypium hirsutum Gohir.D04G009200 KOG2375 - Protein interacting with poly(A)-binding protein D04 - View
Gossypium hirsutum Gohir.D10G054400 PF06741//PF07145 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) D10 + View
Gossypium hirsutum Gohir.A05G406400 KOG2375 - Protein interacting with poly(A)-binding protein A05 + View
Gossypium hirsutum Gohir.A10G052600 KOG2375 - Protein interacting with poly(A)-binding protein A10 + View
Glycine max Glyma.16G005700 PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) Gm16 - View
Glycine max Glyma.07G036300 PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) Gm07 - View
Gossypium raimondii Gorai.012G011100 Chr12 - View
Gossypium raimondii Gorai.011G057800 Chr11 + View
Hydrangea macrophylla Hma1.2p1_0496F.1_g166130 Hma1.2p1_0496F.1 - View
Hydrangea macrophylla Hma1.2p1_0291F.1_g115240 Hma1.2p1_0291F.1 + View
Lotus japonicus Lj3g0018176 PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) chr3 - View
Lonicera japonica Lj9A522G71 GWHAAZE00000009 - View
Lonicera japonica Lj5C39G2 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_5_135681 Lsat_1_v8_lg_5 - View
Magnolia biondii MBI13_g11371_MAGBIO AED:0.03 Chr13 - View
Malus domestica MD09G1186100 CTC-interacting domain 4 Chr09 + View
Malus domestica MD17G1171000 CTC-interacting domain 4 Chr17 + View
Manihot esculenta Manes.04G142700 Chromosome04 - View
Manihot esculenta Manes.11G022200 Chromosome11 + View
Medicago truncatula Medtr8g019560 CTC-interacting domain protein chr8 - View
Nelumbo nucifera Nn6g35582 chr6 - View
Nelumbo nucifera Nn8g38728 chr8 + View
Petunia axillaris Peaxi162Scf00207g01431 CTC-interacting domain 4 Peaxi162Scf00207 - View
Petunia axillaris Peaxi162Scf00038g01820 CTC-interacting domain 4 Peaxi162Scf00038 - View
Punica granatum PGR102G1386 NC_045129.1 - View
Pisum sativum Psat4g183560 Ataxin 2 SM domain chr4LG4 + View
Papaver somniferum PSO421G0240 NW_020619603.1 - View
Populus trichocarpa Potri.003G063000 KOG2375 - Protein interacting with poly(A)-binding protein Chr03 - View
Populus trichocarpa Potri.001G171100 KOG2375 - Protein interacting with poly(A)-binding protein Chr01 + View
Phaseolus vulgaris Phvul.010G133101 Chr10 + View
Rosa chinensis RcHm_v2.0_Chr2g0144721 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0237100 chr08 - View
Rhododendron simsii Rhsim12G0208800 chr12 - View
Striga asiatica SGA_v2.0_scaffold68G22885 scaffold68 + View
Salvia bowleyana SalBow7G3930 GWHASIU00000005 - View
Salvia bowleyana SalBow6G2321 GWHASIU00000002 - View
Sechium edule Sed0005467 LG06 + View
Sechium edule Sed0027854 LG06 - View
Solanum lycopersicum Solyc06g062860.4 Polyadenylate-binding protein-interacting protein 4 (AHRD V3.3 *-* A0A2G3C8H0_CAPCH) SL4.0ch06 - View
Solanum lycopersicum Solyc03g121950.3 Polyadenylate-binding protein-interacting protein 3 (AHRD V3.3 *** A0A2G2WPZ4_CAPBA) SL4.0ch03 - View
Schrenkiella parvula Sp3g12260 KOG2375 - Protein interacting with poly(A)-binding protein ch3-1 + View
Solanum pennellii Sopen06g022320 hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (Saccharomyces cerevisiae) | weak similarity to ataxin-2 related protein (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | CTC-interacting domain 4 (CID4) | FUNCTIONS IN: protein binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: LsmAD domain , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 . Spenn-ch06 - View
Solanum pennellii Sopen03g040770 hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (Saccharomyces cerevisiae) | weak similarity to ataxin-2 related protein (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | CTC-interacting domain 4 (CID4) | FUNCTIONS IN: protein binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: LsmAD domain , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 . Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400004888 Conserved gene of unknown function ST4.03ch06 + View
Trochodendron aralioides TAR383G0203 group10 - View
Trochodendron aralioides TAR626G1385 group3 + View
Theobroma cacao Thecc.06G117700 CTC-interacting domain 3 Chromosome_6 - View
Tarenaya hassleriana THA.LOC104815625 polyadenylate-binding protein-interacting protein 3 isoform X1 NW_010965696.1 - View
Trifolium pratense TPR.G16437 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI31G0664 NC_052233.1 + View
Vitis vinifera GSVIVG01016786001 chr9 + View