Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G12040 LG-3 - View
Actinidia chinensis Actinidia30358 Lachesis_group10 - View
Arabidopsis lyrata AL8G31760 scaffold_8 - View
Avicennia marina MSTRG.14516 ScioBoG_18782_HRSCAF_18867 - View
Arabidopsis thaliana AT5G56130 Transducin/WD40 repeat-like superfamily protein Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860)%2C THO2 (At1g24706)%2C THO3 or TEX1 (At5g56130)%2C THO5 (At5g42920%2C At1g45233)%2C THO6 (At2g19430)%2C and THO7 (At5g16790%2C At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1%2C THO1%2C THO6 accumulate reduced amount of small interfering (si)RNA%2C suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. TEX1%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G67320.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica napus C09p47280 C09 - View
Brassica napus A10p13350 A10 - View
Corylus avellana Haze_09907 Similar to THO3: THO complex subunit 3 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g15600 THO complex subunit 3 chr5 - View
Citrus clementina Ciclev10008971m.g scaffold_1 - View
Cardamine hirsuta CARHR269490 WD-repeat protein, putative Chr8 - View
Carya illinoinensis CiPaw.11G209700 K12880 - THO complex subunit 3 (THOC3) Chr11 - View
Carica papaya Cpa.g.sc12.78 supercontig_12 + View
Capsella rubella Carub.0008s1645 K12880 - THO complex subunit 3 (THOC3) scaffold_8 - View
Daucus carota DCAR_013764 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv40902 GWHABJS00000013 + View
Davidia involucrata Dinv19652 GWHABJS00000001 - View
Eucalyptus grandis Eucgr.F01999 Chr06 + View
Erythranthe guttata Migut.H01720 scaffold_8 + View
Eutrema salsugineum Thhalv10014152m.g K12880 - THO complex subunit 3 (THOC3) scaffold_2 + View
Fragaria x ananassa FAN16G2306 KOG1407 - WD40 repeat protein Fvb3-3 + View
Fragaria x ananassa FAN21G0223 K12880 - THO complex subunit 3 (THOC3) Fvb3-2 + View
Fragaria x ananassa FAN25G1059 KOG1407 - WD40 repeat protein Fvb3-1 - View
Fragaria vesca FvH4_3g41760 K12880 - THO complex subunit 3 (THOC3) Fvb3 + View
Lonicera japonica Lj8A182T68 GWHAAZE00000008 - View
Malus domestica MD11G1042100 Transducin/WD40 repeat-like superfamily protein Chr11 - View
Nicotiana tabacum Nitab4.5_0000152g0140 WD40 repeat, WD40/YVTN repeat-like-containing domain, WD40 repeat, conserved site, G-protein beta WD-40 repeat, WD40-repeat-containing domain Nitab4.5_0000152 + View
Petunia axillaris Peaxi162Scf00232g00531 THO complex subunit 3 Peaxi162Scf00232 - View
Punica granatum PGR083G0512 NC_045133.1 + View
Prunus persica Prupe.6G033200 K12880 - THO complex subunit 3 (THOC3) Pp06 - View
Papaver somniferum PSO541G1089 NC_039363.1 - View
Populus trichocarpa Potri.001G470900 K12880 - THO complex subunit 3 (THOC3) Chr01 - View
Quercus lobata QL08p000733 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0074851 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0234500 chr06 - View
Rhododendron simsii Rhsim04G0008500 chr04 + View
Salix brachista Sabra16G0319500 GWHAAZH00000016 - View
Solanum lycopersicum Solyc07g066060.3 Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A2U1QLT6_ARTAN) SL4.0ch07 - View
Schrenkiella parvula Sp6g17980 K12880 - THO complex subunit 3 (THOC3) ch6-6 - View
Solanum pennellii Sopen07g034240 Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | TEX1 | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG400022149 Transducin family protein ST4.03ch07 - View
Theobroma cacao Thecc.07G002900 Transducin/WD40 repeat-like superfamily protein Chromosome_7 + View
Tarenaya hassleriana THA.LOC104811694 THO complex subunit 3 NW_010965372.1 - View
Tripterygium wilfordii TWI38G1629 NC_052252.1 + View
Tripterygium wilfordii TWI39G0064 NC_052250.1 + View