Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold42G15938 scaffold42 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia30365 Lachesis_group10 + View
Avicennia marina MSTRG.14512 ScioBoG_18782_HRSCAF_18867 + View
Camellia sinensis var. sinensis CSS0030826 PREDICTED: enhancer of mRNA-decapping protein 4-like [Sesamum indicum] Chr7 - View
Cannabis sativa CANSAT11G0621 NC_044377.1 - View
Cannabis sativa CANSAT56G1356 NC_044371.1 - View
Carya illinoinensis CiPaw.12G141800 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr12 + View
Oryza sativa ssp. japonica Os02g0722800 WD40 repeat-like domain containing protein. Similar to Peptidase S26A, signal peptidase I; WD40-like. chr02 - View
Rhododendron simsii Rhsim06G0234000 chr06 + View
Solanum lycopersicum Solyc10g005920.4 enhancer of mRNA-decapping protein 4-like (AHRD V3.3 *** A0A2I4F2H1_9ROSI) SL4.0ch10 + View
Solanum pennellii Sopen10g001880 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch10 + View
Solanum pennellii Sopen07g034150 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch07 + View
Tarenaya hassleriana THA.LOC104815682 enhancer of mRNA-decapping protein 4-like NW_010965696.1 - View
Tripterygium wilfordii TWI39G0122 NC_052250.1 - View
Vaccinium macrocarpon vmacro11629 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View