Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold7G03874 scaffold7 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G3730 LG-6 + View
Aethionema arabicum Aa31LG9G9600 LG-9 + View
Acer truncatum Atru.chr10.2159 chr10 + View
Actinidia chinensis Actinidia26942 Lachesis_group0 - View
Actinidia chinensis Actinidia05530 Lachesis_group20 - View
Arabidopsis lyrata AL6G48400 scaffold_6 - View
Arabidopsis lyrata AL7G32180 scaffold_7 - View
Avicennia marina MSTRG.14645 ScioBoG_18782_HRSCAF_18867 - View
Avicennia marina MSTRG.15971 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.13155 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.7234 ScioBoG_102840_HRSCAF_103099 - View
Amaranthus hybridus Ah.14g088110 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (HD-ZIP protein PDF2) (Homeodomain transcription factor PDF2) AmaHy_arrow1_Scaffold_14 - View
Amaranthus hybridus Ah.12g055430 Homeobox-leucine zipper protein HDG5 (HD-ZIP protein HDG5) (Homeodomain GLABRA 2-like protein 5) (Homeodomain transcription factor HDG5) (Protein HOMEODOMAIN GLABROUS 5) AmaHy_arrow1_Scaffold_12 + View
Amaranthus hybridus Ah.09g235210 AmaHy_arrow1_Scaffold_9 - View
Arabidopsis thaliana AT4G21750 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost%2C epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2%2C another L1-specific gene%2C suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT4G04890 protodermal factor 2 Encodes a homeodomain protein that is expressed in the LI layer of the vegetative%2C floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 2 (PDF2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaNung00836 Contig365 - View
Brassica carinata BcaC04g21336 ChrC04 - View
Brassica carinata BcaC09g51206 ChrC09 - View
Brassica carinata BcaC01g00740 ChrC01 + View
Brassica carinata BcaB01g01844 ChrB01 - View
Brassica napus C09p33030 C09 + View
Brassica napus A03p52920 A03 + View
Brassica napus C07p51370 C07 + View
Brassica napus A09p26030 A09 + View
Brassica napus A03p30220 A03 - View
Brassica napus A08p15440 A08 + View
Brassica napus A01p13080 A01 + View
Brassica oleracea BolC1t01530H C1 + View
Brassica oleracea BolC9t56138H C9 + View
Brassica oleracea BolC7t45636H C7 + View
Brassica rapa BraA01t01251Z A01 + View
Brassica rapa BraA08t33521Z A08 + View
Brassica rapa BraA03t14368Z A03 + View
Brassica rapa BraA03t12206Z A03 - View
Brassica rapa BraA09t38169Z A09 + View
Camellia sinensis var. sinensis CSS0004146 PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] Chr8 - View
Camellia sinensis var. sinensis CSS0013266 PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] Chr8 - View
Capsicum annuum CAN.G105.7 PGAv.1.6.scaffold105 + View
Capsicum annuum CAN.G569.27 PGAv.1.6.scaffold569 - View
Capsicum annuum CAN.G404.13 PGAv.1.6.scaffold404 + View
Cannabis sativa CANSAT56G0812 NC_044371.1 - View
Cicer arietinum L. Ca_25181_v3 Ca_LG8_v3 + View
Corylus avellana Haze_06755 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) 2 + View
Corylus avellana Haze_08123 Similar to HDG5: Homeobox-leucine zipper protein HDG5 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc02_g11560 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 chr2 - View
Coffea canephora Cc08_g03370 Homeobox-leucine zipper protein ROC3 chr8 - View
Citrus clementina Ciclev10014424m.g scaffold_2 - View
Ceratophyllum demersum CDE02G4443 1 - View
Carpinus fangiana Cfa000261 Cfa01 - View
Cardamine hirsuta CARHR228490 Homeobox-leucine zipper protein family Chr7 + View
Cardamine hirsuta CARHR252660 Homeobox-leucine zipper protein family Chr8 + View
Carya illinoinensis CiPaw.12G127600 PTHR24326:SF239 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 Chr12 + View
Carya illinoinensis CiPaw.04G116800 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr04 - View
Carya illinoinensis CiPaw.10G068800 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr10 + View
Carya illinoinensis CiPaw.09G088400 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Chr09 + View
Carya illinoinensis CiPaw.12G067600 PTHR24326:SF267 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG4-RELATED Chr12 + View
Citrullus lanatus ClCG03G004930 Homeobox-leucine zipper family protein CG_Chr03 - View
Citrullus lanatus ClCG01G022120 Homeobox-leucine zipper family protein CG_Chr01 - View
Cucumis melo MELO3C007377.2 Homeobox-leucine zipper family protein chr08 + View
Cucumis melo MELO3C002477.2 Homeobox-leucine zipper family protein chr12 + View
Carica papaya Cpa.g.sc198.17 supercontig_198 + View
Chenopodium quinoa AUR62007346 ROC3: Homeobox-leucine zipper protein ROC3 C_Quinoa_Scaffold_1971 + View
Capsella rubella Carub.0007s1965 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_7 - View
Capsella rubella Carub.0006s3281 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_6 - View
Cucumis sativus L. CsaV3_6G049180 Homeobox-leucine zipper protein like chr6 - View
Cucumis sativus L. CsaV3_1G010990 Homeobox-leucine zipper protein like chr1 - View
Daucus carota DCAR_008230 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_021180 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_004201 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_008130 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv17824 GWHABJS00000016 + View
Davidia involucrata Dinv20026 GWHABJS00000020 + View
Durio zibethinus Duzib192G0772 NW_019168037.1 - View
Durio zibethinus Duzib160G0785 NW_019168015.1 + View
Durio zibethinus Duzib084G0282 NW_019167827.1 - View
Durio zibethinus Duzib068G1266 NW_019167838.1 - View
Durio zibethinus Duzib235G0755 NW_019167982.1 + View
Erigeron canadensis ECA248G0627 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA236G4342 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.E04108 Chr05 + View
Erythranthe guttata Migut.H01557 scaffold_8 + View
Erythranthe guttata Migut.M01293 scaffold_13 + View
Eutrema salsugineum Thhalv10028459m.g PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_3 + View
Eutrema salsugineum Thhalv10024488m.g K09338 - homeobox-leucine zipper protein (HD-ZIP) scaffold_1 - View
Fragaria x ananassa FAN25G0553 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Fvb3-1 + View
Fragaria x ananassa FAN21G1266 KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain Fvb3-2 + View
Fragaria vesca FvH4_3g02520 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain Fvb3 - View
Gossypium hirsutum Gohir.D06G152400 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain D06 + View
Gossypium hirsutum Gohir.D03G175700 PTHR24326:SF267 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG4-RELATED D03 - View
Gossypium hirsutum Gohir.A10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED A10 - View
Gossypium hirsutum Gohir.D01G063932 PF01852 - START domain (START) D01 + View
Gossypium hirsutum Gohir.D10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED D10 - View
Gossypium hirsutum Gohir.A06G146300 KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain A06 + View
Glycine max Glyma.20G142200 PTHR24326//PTHR24326:SF239 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 Gm20 + View
Gossypium raimondii Gorai.002G084500 Chr02 + View
Gossypium raimondii Gorai.010G177800 Chr10 + View
Gossypium raimondii Gorai.011G016200 Chr11 - View
Lonicera japonica Lj1C1226T9 GWHAAZE00000001 + View
Lonicera japonica Lj2A272T64 GWHAAZE00000002 - View
Lonicera japonica Lj8A124T44 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_7_17180 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_4_60501 K09338 - homeobox-leucine zipper protein (HD-ZIP) Lsat_1_v8_lg_4 + View
Malus domestica MD17G1095000 homeodomain GLABROUS 2 Chr17 + View
Malus domestica MD05G1342200 protodermal factor 2 Chr05 + View
Malus domestica MD10G1315800 protodermal factor 2 Chr10 + View
Manihot esculenta Manes.13G071000 Chromosome13 - View
Manihot esculenta Manes.16G011100 Chromosome16 - View
Medicago truncatula Medtr5g029320 homeobox leucine zipper protein chr5 + View
Nelumbo nucifera Nn1g03603 chr1 - View
Nicotiana tabacum Nitab4.5_0002347g0050 START domain, Homeobox domain, Homeodomain-like, START-like domain Nitab4.5_0002347 - View
Petunia axillaris Peaxi162Scf00262g00121 Homeobox-leucine zipper protein ROC7 Peaxi162Scf00262 - View
Punica granatum PGR031G1996 NC_045127.1 - View
Prunus persica Prupe.4G024800 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Pp04 - View
Papaver somniferum PSO675G5351 NC_039358.1 + View
Papaver somniferum PSO541G0456 NC_039363.1 + View
Populus trichocarpa Potri.001G137800 PF00046//PF01852 - Homeobox domain (Homeobox) // START domain (START) Chr01 - View
Populus trichocarpa Potri.003G096000 PF00046//PF01852 - Homeobox domain (Homeobox) // START domain (START) Chr03 + View
Populus trichocarpa Potri.011G025000 KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain Chr11 - View
Populus trichocarpa Potri.004G020400 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Chr04 - View
Phaseolus vulgaris Phvul.002G137000 PTHR24326:SF267 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG4-RELATED Chr02 + View
Quercus lobata QL12p001354 12 + View
Quercus lobata QL05p074642 5 - View
Rosa chinensis RcHm_v2.0_Chr5g0003831 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0156800 chr13 - View
Rhododendron simsii Rhsim02G0111100 chr02 - View
Salvia bowleyana SalBow8G4303 GWHASIU00000004 - View
Salix brachista Sabra03G0064800 GWHAAZH00000003 + View
Salix brachista Sabra01G0106500 GWHAAZH00000001 - View
Simmondsia chinensis Sc17g0007180 GWHAASQ00000017 + View
Sechium edule Sed0026681 LG01 + View
Sechium edule Sed0014068 LG10 - View
Sechium edule Sed0025655 LG14 - View
Sechium edule Sed0010072 LG05 - View
Solanum lycopersicum Solyc10g006420.4 Homeobox-leucine zipper protein HDG2-like (AHRD V3.3 *** A0A2K3P3R2_TRIPR) SL4.0ch10 - View
Solanum lycopersicum Solyc08g076370.3 Homeobox-leucine zipper protein ROC3 (AHRD V3.3 *** A0A2G3DCR4_CAPCH) SL4.0ch08 + View
Solanum lycopersicum Solyc02g080260.4 Woolly SL4.0ch02 + View
Schrenkiella parvula Sp7g19920 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED ch7-4 + View
Schrenkiella parvula Sp6g04070 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED ch6-1 + View
Solanum pennellii Sopen02g024970 Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. | protodermal factor 2 (PDF2) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development | LOCATED IN: nucleus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Homeobox, conserved site , Homeobox , Homeodomain-like , Lipid-binding START , Homeodomain-related | BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Spenn-ch02 + View
Solanum tuberosum PGSC0003DMG400011256 Homeobox-leucine zipper protein MERISTEM L1 ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400002394 Homeobox protein ST4.03ch08 + View
Solanum tuberosum PGSC0003DMG400002076 Homeobox protein ST4.03ch02 + View
Selenicereus undatus Hund21382 Scaffold_33680 + View
Selenicereus undatus Hund23498 Scaffold_3410 - View
Trochodendron aralioides TAR624G0689 group9 + View
Trochodendron aralioides TAR626G1241 group3 - View
Theobroma cacao Thecc.06G215800 Protodermal factor 2 Chromosome_6 + View
Tripterygium wilfordii TWI18G0551 NC_052241.1 - View
Tripterygium wilfordii TWI38G0018 NC_052252.1 + View
Tripterygium wilfordii TWI63G1340 NC_052240.1 - View
Vaccinium macrocarpon vmacro03700 Similar to ATML1: Homeobox-leucine zipper protein MERISTEM L1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro14190 Similar to HDG11: Homeobox-leucine zipper protein HDG11 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro15824 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G0809 CM024079.1 - View
Vitis vinifera GSVIVG01012643001 chr10 + View