Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold25G10855 scaffold25 - View
SGA_v2.0_scaffold114G31857 scaffold114 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G16700 LG-4 + View
Aethionema arabicum Aa31LG4G5090 LG-4 + View
Acer truncatum Atru.chr9.2386 chr9 + View
Actinidia chinensis Actinidia04952 Lachesis_group1 - View
Actinidia chinensis Actinidia37690 Lachesis_group13 + View
Actinidia chinensis Actinidia34966 Lachesis_group2 - View
Actinidia chinensis Actinidia19071 Lachesis_group9 - View
Avicennia marina MSTRG.11414 ScioBoG_14204_HRSCAF_14270 - View
Avicennia marina MSTRG.4391 ScioBoG_102837_HRSCAF_103074 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JGQP5W PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT1G74870 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: sperm cell%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G48070.1)%3B Has 508 Blast hits to 508 proteins in 180 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 172%3B Fungi - 119%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g09703 ChrB02 + View
Brassica napus C02p62480 C02 + View
Brassica napus C06p48890 C06 + View
Brassica oleracea BolC6t39925H C6 + View
Brassica rapa BraA07t31595Z A07 + View
Beta vulgaris EL10Ac5g10856 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0007260 unnamed protein product [Coffea canephora] Chr2 - View
Capsicum annuum CAN.G628.64 PGAv.1.6.scaffold628 + View
Cicer arietinum L. Ca_21876_v3 Ca_LG7_v3 + View
Corylus avellana Haze_07423 Protein of unknown function 4 + View
Coffea canephora Cc04_g16210 Putative RING/U-box superfamily protein chr4 + View
Citrus clementina Ciclev10020913m.g scaffold_3 + View
Carpinus fangiana Cfa019053 Cfa08 + View
Carya illinoinensis CiPaw.11G033600 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr11 - View
Citrullus lanatus ClCG06G016630 CCR4-NOT transcription complex subunit CG_Chr06 + View
Cucumis melo MELO3C017131.2 General negative regulator of transcription subunit 4 chr02 + View
Chenopodium quinoa AUR62031061 MOT2: General negative regulator of transcription subunit 4 C_Quinoa_Scaffold_2689 - View
Chenopodium quinoa AUR62008299 MOT2: General negative regulator of transcription subunit 4 C_Quinoa_Scaffold_3422 - View
Capsella rubella Carub.0002s2165 PTHR12603 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED scaffold_2 + View
Cucumis sativus L. CsaV3_1G001880 CCR4-NOT transcription complex subunit 4 chr1 - View
Daucus carota DCAR_026098 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv02655 GWHABJS00000019 - View
Davidia involucrata Dinv13125 GWHABJS00000006 + View
Durio zibethinus Duzib205G1906 NW_019168381.1 - View
Erigeron canadensis ECA232G1015 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA246G1618 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.K02893 Chr11 - View
Eucalyptus grandis Eucgr.B00376 Chr02 - View
Erythranthe guttata Migut.D01900 scaffold_4 - View
Eutrema salsugineum Thhalv10018832m.g PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN scaffold_9 - View
Fragaria x ananassa FAN04G3183 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Fvb5-4 + View
Fragaria x ananassa FAN18G2664 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Fvb5-1 + View
Fragaria x ananassa FAN13G0872 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Fvb5-2 + View
Fragaria x ananassa FAN08G3627 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Fvb5-3 - View
Fragaria vesca FvH4_5g16220 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Fvb5 + View
Glycine max Glyma.17G094000 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm17 - View
Glycine max Glyma.05G032700 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm05 + View
Hydrangea macrophylla Hma1.2p1_0002F.1_g002940 Hma1.2p1_0002F.1 - View
Lupinus albus Lalb_Chr13g0298001 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr13 - View
Lupinus albus Lalb_Chr08g0236111 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr08 + View
Lupinus albus Lalb_Chr12g0201311 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr12 + View
Lupinus albus Lalb_Chr07g0182481 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr07 + View
Lotus japonicus Lj2g0018699 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN chr2 + View
Lotus japonicus Lj4g0009456 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN chr4 + View
Lonicera japonica Lj5P120T23 GWHAAZE00000005 + View
Lonicera japonica Lj9A455T56 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_4_74020 PTHR12603:SF5 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Lsat_1_v8_lg_4 + View
Malus domestica MD14G1188800 RING/U-box superfamily protein Chr14 - View
Malus domestica MD06G1182900 RING/U-box superfamily protein Chr06 - View
Manihot esculenta Manes.14G071600 Chromosome14 - View
Manihot esculenta Manes.06G099500 Chromosome06 + View
Medicago truncatula Medtr4g107090 hypothetical protein chr4 - View
Nicotiana tabacum Nitab4.5_0000642g0290 Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type Nitab4.5_0000642 + View
Nicotiana tabacum Nitab4.5_0000003g0290 Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type Nitab4.5_0000003 - View
Olea europaea Oeu022180.1 chr12 - View
Olea europaea Oeu016328.1 chr18 - View
Petunia axillaris Peaxi162Scf00017g02226 RING/U-box superfamily protein Peaxi162Scf00017 + View
Petunia axillaris Peaxi162Scf00689g00417 RING/U-box superfamily protein Peaxi162Scf00689 - View
Punica granatum PGR083G0864 NC_045133.1 - View
Prunus persica Prupe.5G181100 Pp05 - View
Populus trichocarpa Potri.015G069400 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr15 + View
Populus trichocarpa Potri.012G074500 PTHR12603//PTHR12603:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX RELATED // RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr12 + View
Phaseolus vulgaris Phvul.003G196200 Chr03 + View
Rosa chinensis RcHm_v2.0_Chr7g0179881 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim12G0160900 chr12 + View
Rhododendron simsii Rhsim08G0166900 chr08 + View
Salix brachista Sabra12G0053000 GWHAAZH00000012 + View
Salix brachista Sabra15G0093700 GWHAAZH00000015 + View
Simmondsia chinensis Sc12g0005590 GWHAASQ00000012 + View
Simmondsia chinensis Sc10g0010030 GWHAASQ00000010 + View
Simmondsia chinensis Sc04g0002200 GWHAASQ00000004 - View
Sechium edule Sed0003261 LG08 - View
Sechium edule Sed0002761 LG12 - View
Solanum lycopersicum Solyc03g113700.3 General negative regulator of transcription subunit 4 (AHRD V3.3 *** A0A1J3F722_NOCCA) SL4.0ch03 + View
Solanum lycopersicum Solyc06g071270.3 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1LVQ0_ARTAN) SL4.0ch06 + View
Schrenkiella parvula Sp5g30000 KOG2068 - MOT2 transcription factor ch5-7 + View
Solanum pennellii Sopen03g032750 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch03 + View
Solanum pennellii Sopen06g027570 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400033057 Putative anti-virus transcriptional factor ST4.03ch06 + View
Selenicereus undatus Hund02704 Scaffold_33678 + View
Selenicereus undatus Hund09399 Scaffold_10417 + View
Tarenaya hassleriana THA.LOC104818224 uncharacterized protein LOC104818224 NW_010966092.1 - View
Tripterygium wilfordii TWI60G0871 NC_052246.1 - View
Tripterygium wilfordii TWI15G0643 NC_052247.1 - View
Vaccinium macrocarpon vmacro19348 Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro16581 Similar to SPAC16C9.04c: Putative general negative regulator of transcription C16C9.04c (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G1056 CM024074.1 - View
Vitis vinifera GSVIVG01007838001 chr17 + View