Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold120G32988 scaffold120 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G6290 LG-5 + View
Actinidia chinensis Actinidia23164 Lachesis_group20 + View
Actinidia chinensis Actinidia34495 Lachesis_group15 + View
Actinidia chinensis Actinidia23838 Lachesis_group9 - View
Avicennia marina MSTRG.17918 ScioBoG_19834_HRSCAF_19925 - View
Avicennia marina MSTRG.21255 ScioBoG_26769_HRSCAF_26899 - View
Avicennia marina MSTRG.12710 ScioBoG_17730_HRSCAF_17811 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.V64ZKA PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ME94TX PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT2G30470 B3 domain-containing transcription repressor VAL1 HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3%2C ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6%25 sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50%C2%B5M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. high-level expression of sugar-inducible gene 2 (HSI2)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%2C Zinc finger%2C CW-type (InterPro:IPR011124)%3B BEST Arabidopsis thaliana protein match is: HSI2-like 1 (TAIR:AT4G32010.1)%3B Has 1263 Blast hits to 1242 proteins in 97 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 31%3B Fungi - 0%3B Plants - 1168%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaB06g28367 ChrB06 - View
Brassica napus A05p15000 A05 + View
Brassica oleracea BolC4t27443H C4 - View
Brassica rapa BraA04t17847Z A04 - View
Capsicum annuum CAN.G874.77 PGAv.1.6.scaffold874 + View
Cannabis sativa CANSAT54G2877 NC_044375.1 - View
Cicer arietinum L. Ca_05709_v3 Ca_LG2_v3 - View
Cicer arietinum L. Ca_15059_v3 Ca_LG5_v3 - View
Corylus avellana Haze_24471 Similar to Os07g0679700: B3 domain-containing protein Os07g0679700 (Oryza sativa subsp. japonica OX%3D39947) 6 - View
Coffea canephora Cc01_g15330 Putative B3 domain-containing protein Os07g0679700 chr1 - View
Citrus clementina Ciclev10000225m.g scaffold_5 - View
Carpinus fangiana Cfa011836 Cfa04 - View
Cardamine hirsuta CARHR123910 Transcription factor, putative Chr4 - View
Carya illinoinensis CiPaw.14G050500 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Chr14 + View
Carya illinoinensis CiPaw.13G063600 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Chr13 + View
Carica papaya Cpa.g.sc2.296 supercontig_2 + View
Chenopodium quinoa AUR62009734 Os07g0679700: B3 domain-containing protein Os07g0679700 C_Quinoa_Scaffold_2493 - View
Davidia involucrata Dinv12281 GWHABJS00000007 - View
Davidia involucrata Dinv28731 GWHABJS00000010 - View
Durio zibethinus Duzib168G1222 NW_019168159.1 - View
Erigeron canadensis ECA247G0655 Conyza_canadensis_scaffold:7 - View
Erythranthe guttata Migut.N00730 scaffold_14 + View
Erythranthe guttata Migut.D00818 scaffold_4 + View
Fragaria x ananassa FAN21G2887 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Fvb3-2 - View
Fragaria x ananassa FAN16G0817 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Fvb3-3 - View
Fragaria x ananassa FAN25G2959 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Fvb3-1 + View
Glycine max Glyma.18G052100 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Gm18 + View
Glycine max Glyma.14G204400 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Gm14 - View
Glycine max Glyma.02G236400 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Gm02 - View
Glycine max Glyma.11G197900 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Gm11 - View
Lupinus albus Lalb_Chr17g0345631 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Lalb_Chr17 - View
Lupinus albus Lalb_Chr15g0085751 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Lalb_Chr15 + View
Lupinus albus Lalb_Chr10g0103791 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Lalb_Chr10 - View
Lupinus albus Lalb_Chr18g0054211 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Lalb_Chr18 + View
Lotus japonicus Lj6g0000203 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED chr6 + View
Lotus japonicus LjContig00141g0014835 PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Contig00141 + View
Lonicera japonica Lj1C114T5 GWHAAZE00000001 + View
Lonicera japonica Lj2C1102G4 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_13800 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_5_174940 Lsat_1_v8_lg_5 + View
Malus domestica MD03G1051600 HSI2-like 1 Chr03 + View
Malus domestica MD11G1053500 high-level expression of sugar-inducible gene 2 Chr11 + View
Medicago truncatula Medtr5g075410 B3 domain transcription repressor VAL2 chr5 - View
Nicotiana tabacum Nitab4.5_0002091g0080 B3 DNA binding domain, DNA-binding pseudobarrel domain, Zinc finger, CW-type Nitab4.5_0002091 - View
Nicotiana tabacum Nitab4.5_0002759g0100 Zinc finger, CW-type, B3 DNA binding domain, DNA-binding pseudobarrel domain Nitab4.5_0002759 - View
Olea europaea Oeu058236.1 chr11 + View
Prunus persica Prupe.6G041000 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Pp06 + View
Pisum sativum Psat2g050920 B3 DNA binding domain chr2LG1 + View
Populus trichocarpa Potri.013G157500 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Chr13 - View
Populus trichocarpa Potri.019G130300 PTHR23336//PTHR23336:SF23 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Chr19 - View
Phaseolus vulgaris Phvul.008G247500 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Chr08 + View
Phaseolus vulgaris Phvul.006G079300 Chr06 - View
Quercus lobata QL01p024575 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0073201 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim01G0243100 chr01 - View
Salvia bowleyana SalBow2G2917 GWHASIU00000007 - View
Salix brachista Sabra19G0127200 GWHAAZH00000019 - View
Solanum lycopersicum Solyc06g082520.3 B3 domain-containing protein (AHRD V3.3 *** A0A2K3NLM2_TRIPR) SL4.0ch06 - View
Schrenkiella parvula Sp4g13000 PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED ch4-6 - View
Solanum pennellii Sopen06g033900 HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50µM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. | high-level expression of sugar-inducible gene 2 (HSI2) | CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 , Zinc finger, CW-type | BEST Arabidopsis thaliana protein match is: HSI2-like 1 Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400030467 Transcription factor ST4.03ch06 - View
Trochodendron aralioides TAR633G2285 group2 - View
Theobroma cacao Thecc.09G364000 High-level expression of sugar-inducible gene 2 Chromosome_9 - View
Vaccinium macrocarpon vmacro14639 Similar to Os07g0679700: B3 domain-containing protein Os07g0679700 (Oryza sativa subsp. japonica OX%3D39947) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G2318 CM024075.1 + View
Vigna mungo VMungo0647G1289 CM024073.1 - View
Vitis vinifera GSVIVG01024559001 chr6 - View