Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001107', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001107' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001107' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001107' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001107' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001107', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001107' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001107' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001107' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001107' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001107', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001107' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001107' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001107' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001107' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001107', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001107' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001107', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '553', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' ) ), 'genes' => array( 'A01p12850' => 'bna', 'A03p17050' => 'bna', 'A03p61180' => 'bna', 'A04p23200' => 'bna', 'A05p15000' => 'bna', 'A08p08740' => 'bna', 'Aa31LG5G11500' => 'aar', 'Aa31LG5G6290' => 'aar', 'Aa31LG6G3560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3809' => 'aag', 'Actinidia01933' => 'ach', 'Actinidia05581' => 'ach', 'Actinidia05582' => 'ach', 'Actinidia11806' => 'ach', 'Actinidia18745' => 'ach', 'Actinidia20790' => 'ach', 'Actinidia23164' => 'ach', 'Actinidia23838' => 'ach', 'Actinidia24063' => 'ach', 'Actinidia32566' => 'ach', 'Actinidia34495' => 'ach', 'Actinidia35279' => 'ach', 'Ah.08g215510' => 'amhyb', 'AL4G25350' => 'aly', 'AL7G19880' => 'aly', 'AL7G32470' => 'aly', 'Aqoxy1G02751' => 'aox', 'Aqoxy4G01407' => 'aox', 'Aqoxy4G02421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3D2H0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45QRAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F6BXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WK0GY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ET0DBR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I35XGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB956V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME94TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5VJX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V64ZKA' => 'arhy', 'AT2G30470' => 'ath', 'AT4G21550' => 'ath', 'AT4G32010' => 'ath', 'ATR0693G001' => 'atr', 'ATR0899G001' => 'atr', 'ATR1127G227' => 'atr', 'Atru.chr10.1999' => 'acertr', 'Atru.chr10.2294' => 'acertr', 'Atru.chr10.2295' => 'acertr', 'Atru.chr8.120' => 'acertr', 'AUR62006415' => 'cqu', 'AUR62009734' => 'cqu', 'AUR62029763' => 'cqu', 'AUR62036210' => 'cqu', 'BcaB01g04102' => 'bca', 'BcaB02g10325' => 'bca', 'BcaB06g28367' => 'bca', 'BcaC01g06000' => 'bca', 'BcaC02g08005' => 'bca', 'BcaC02g08019' => 'bca', 'BcaC02g11136' => 'bca', 'BcaC09g51989' => 'bca', 'BcaNung02785' => 'bca', 'BcaNung02786' => 'bca', 'BcaNung02788' => 'bca', 'BolC1t00689H' => 'bol', 'BolC1t01501H' => 'bol', 'BolC3t14388H' => 'bol', 'BolC4t23547H' => 'bol', 'BolC4t27443H' => 'bol', 'BolC7t46352H' => 'bol', 'BraA01t01229Z' => 'bra', 'BraA03t10981Z' => 'bra', 'BraA03t15156Z' => 'bra', 'BraA03t15162Z' => 'bra', 'BraA03t15163Z' => 'bra', 'BraA04t17847Z' => 'bra', 'BraA05t20426Z' => 'bra', 'C01p06920' => 'bna', 'C01p15470' => 'bna', 'C03p20120' => 'bna', 'C04p20080' => 'bna', 'C04p59350' => 'bna', 'C04p59520' => 'bna', 'C07p59040' => 'bna', 'CAN.G1110.44' => 'can', 'CAN.G1181.21' => 'can', 'CAN.G473.153' => 'can', 'CAN.G487.6' => 'can', 'CAN.G874.77' => 'can', 'CANSAT54G2877' => 'cansat', 'CANSAT56G2859' => 'cansat', 'CARHR123910' => 'chi', 'CARHR228220' => 'chi', 'CARHR239910' => 'chi', 'Carub.0004s1163' => 'cru', 'Carub.0007s0854' => 'cru', 'Carub.0007s1986' => 'cru', 'Ca_00265_v3' => 'car', 'Ca_05709_v3' => 'car', 'Ca_07761_v3' => 'car', 'Ca_15059_v3' => 'car', 'Ca_26793_v3' => 'car', 'Ca_27478_v3' => 'car', 'Cc01_g15330' => 'ccan', 'Cc02_g12530' => 'ccan', 'Cc05_g12680' => 'ccan', 'Cc06_g00410' => 'ccan', 'CDE01G0299' => 'cde', 'CDE02G3371' => 'cde', 'CDE02G4190' => 'cde', 'CDE05G1601' => 'cde', 'CDE06G1395' => 'cde', 'CDE07G1254' => 'cde', 'CDE09G0317' => 'cde', 'CDE12G0748' => 'cde', 'Cfa009430' => 'cfa', 'Cfa011836' => 'cfa', 'Cfa017036' => 'cfa', 'Ciclev10000225m.g' => 'ccl', 'Ciclev10011039m.g' => 'ccl', 'Ciclev10014219m.g' => 'ccl', 'Ciclev10033303m.g' => 'ccl', 'CiPaw.09G158700' => 'cil', 'CiPaw.09G221200' => 'cil', 'CiPaw.10G119100' => 'cil', 'CiPaw.13G063600' => 'cil', 'CiPaw.14G050500' => 'cil', 'ClCG01G022680' => 'cla', 'ClCG03G000070' => 'cla', 'ClCG10G022750' => 'cla', 'COL.COLO4_09479' => 'col', 'COL.COLO4_11216' => 'col', 'COL.COLO4_16356' => 'col', 'Cpa.g.c33243' => 'cpa', 'Cpa.g.sc0.91' => 'cpa', 'Cpa.g.sc2.296' => 'cpa', 'Cpa.g.sc3317.1' => 'cpa', 'Cpa.g.sc80.115' => 'cpa', 'Cre13.g562400' => 'cre', 'CsaV3_1G004780' => 'csa', 'CsaV3_3G033070' => 'csa', 'CsaV3_6G049860' => 'csa', 'CSS0004278' => 'camsi', 'CSS0012633' => 'camsi', 'CSS0029200' => 'camsi', 'CSS0029621' => 'camsi', 'DCAR_004135' => 'dca', 'DCAR_004795' => 'dca', 'DCAR_008701' => 'dca', 'DCAR_023976' => 'dca', 'DCAR_024888' => 'dca', 'DCAR_024889' => 'dca', 'DCAR_028123' => 'dca', 'DCAR_028918' => 'dca', 'Dinv12281' => 'din', 'Dinv22365' => 'din', 'Dinv25339' => 'din', 'Dinv25622' => 'din', 'Dinv28731' => 'din', 'Dinv39812' => 'din', 'Dinv40501' => 'din', 'Duzib151G0807' => 'dzi', 'Duzib160G0545' => 'dzi', 'Duzib168G1222' => 'dzi', 'Duzib170G0064' => 'dzi', 'Duzib192G0535' => 'dzi', 'Duzib212G0303' => 'dzi', 'Duzib235G1349' => 'dzi', 'ECA236G0358' => 'eca', 'ECA240G3731' => 'eca', 'ECA240G4198' => 'eca', 'ECA246G1185' => 'eca', 'ECA246G1251' => 'eca', 'ECA247G0655' => 'eca', 'ECA247G0708' => 'eca', 'ECA248G0082' => 'eca', 'ECA248G0625' => 'eca', 'EL10Ac7g15850' => 'bvu', 'EL10Ac7g17099' => 'bvu', 'EL10Ac8g20616' => 'bvu', 'Eucgr.B04027' => 'egr', 'Eucgr.E03462' => 'egr', 'Eucgr.E03463' => 'egr', 'Eucgr.E03464' => 'egr', 'Eucgr.E03465' => 'egr', 'Eucgr.E03467' => 'egr', 'Eucgr.F02704' => 'egr', 'Eucgr.L01473' => 'egr', 'Eucgr.L01474' => 'egr', 'Eucgr.L03371' => 'egr', 'FAN02G3290' => 'fan', 'FAN05G0406' => 'fan', 'FAN05G2349' => 'fan', 'FAN05G2694' => 'fan', 'FAN05G4211' => 'fan', 'FAN08G0491' => 'fan', 'FAN09G2439' => 'fan', 'FAN11G0184' => 'fan', 'FAN11G1965' => 'fan', 'FAN14G0719' => 'fan', 'FAN16G0817' => 'fan', 'FAN16G1966' => 'fan', 'FAN16G2323' => 'fan', 'FAN16G3552' => 'fan', 'FAN18G0702' => 'fan', 'FAN21G1205' => 'fan', 'FAN21G2887' => 'fan', 'FAN21G3150' => 'fan', 'FAN25G0036' => 'fan', 'FAN25G2959' => 'fan', 'FvH4_3g04120' => 'fve', 'FvH4_3g20963' => 'fve', 'FvH4_3g21641' => 'fve', 'FvH4_3g40520' => 'fve', 'FvH4_6g09910' => 'fve', 'Glyma.01G133000' => 'gma', 'Glyma.02G236400' => 'gma', 'Glyma.03G035200' => 'gma', 'Glyma.11G197900' => 'gma', 'Glyma.13G245900' => 'gma', 'Glyma.14G204400' => 'gma', 'Glyma.15G067900' => 'gma', 'Glyma.18G052100' => 'gma', 'Gohir.A01G068500' => 'ghi', 'Gohir.A02G003400' => 'ghi', 'Gohir.A03G023100' => 'ghi', 'Gohir.A05G165000' => 'ghi', 'Gohir.A10G020500' => 'ghi', 'Gohir.A10G150600' => 'ghi', 'Gohir.D01G055801' => 'ghi', 'Gohir.D02G003800' => 'ghi', 'Gohir.D03G145600' => 'ghi', 'Gohir.D05G168000' => 'ghi', 'Gohir.D10G021300' => 'ghi', 'Gohir.D10G115700' => 'ghi', 'Gorai.002G075900' => 'gra', 'Gorai.003G152700' => 'gra', 'Gorai.005G004300' => 'gra', 'Gorai.009G173100' => 'gra', 'Gorai.011G022400' => 'gra', 'Gorai.011G127500' => 'gra', 'GSVIVG01003212001' => 'vvi', 'GSVIVG01014432001' => 'vvi', 'GSVIVG01024559001' => 'vvi', 'GSVIVG01030182001' => 'vvi', 'HanXRQChr01g0012921' => 'han', 'HanXRQChr05g0156481' => 'han', 'HanXRQChr09g0263911' => 'han', 'HanXRQChr10g0287561' => 'han', 'HanXRQChr10g0291681' => 'han', 'HanXRQChr14g0451311' => 'han', 'HanXRQChr15g0475761' => 'han', 'HanXRQChr16g0522651' => 'han', 'Haze_06565' => 'cav', 'Haze_21173' => 'cav', 'Haze_24471' => 'cav', 'Hma1.2p1_0015F.1_g010530' => 'hma', 'Hma1.2p1_0144F.1_g064790' => 'hma', 'Hma1.2p1_0159F.1_g070490' => 'hma', 'Hma1.2p1_0170F.1_g075150' => 'hma', 'Hma1.2p1_0537F.1_g174350' => 'hma', 'Hma1.2p1_1143F.1_g261050' => 'hma', 'Hma1.2p1_1363F.1_g278320' => 'hma', 'Hma1.2p1_1363F.1_g278330' => 'hma', 'Hma1.2p1_1363F.1_g278340' => 'hma', 'Hma1.2p1_1380F.1_g279330' => 'hma', 'HPP92_011889' => 'vpl', 'HPP92_013792' => 'vpl', 'HPP92_013835' => 'vpl', 'HPP92_014068' => 'vpl', 'Hund02209' => 'sun', 'Hund19762' => 'sun', 'Hund23376' => 'sun', 'Hund23377' => 'sun', 'Lalb_Chr07g0190391' => 'lal', 'Lalb_Chr10g0103791' => 'lal', 'Lalb_Chr12g0207721' => 'lal', 'Lalb_Chr15g0085751' => 'lal', 'Lalb_Chr15g0090101' => 'lal', 'Lalb_Chr17g0345631' => 'lal', 'Lalb_Chr18g0054211' => 'lal', 'Lalb_Chr18g0059911' => 'lal', 'Lalb_Chr20g0110001' => 'lal', 'Lalb_Chr20g0117341' => 'lal', 'Lalb_Chr20g0122251' => 'lal', 'Lj1A852T44' => 'lonja', 'Lj1C114T5' => 'lonja', 'Lj1C1212T16' => 'lonja', 'Lj1C1212T17' => 'lonja', 'Lj2C1102G4' => 'lonja', 'Lj3A941G98' => 'lonja', 'Lj3A941G99' => 'lonja', 'Lj3g0024939' => 'lja', 'Lj4g0017877' => 'lja', 'Lj6g0000203' => 'lja', 'Lj6g0008648' => 'lja', 'LjContig00141g0014835' => 'lja', 'Lsat_1_v5_gn_0_34560' => 'lsa', 'Lsat_1_v5_gn_2_94561' => 'lsa', 'Lsat_1_v5_gn_4_110760' => 'lsa', 'Lsat_1_v5_gn_4_122501' => 'lsa', 'Lsat_1_v5_gn_5_174940' => 'lsa', 'Lsat_1_v5_gn_5_6840' => 'lsa', 'Lsat_1_v5_gn_7_19720' => 'lsa', 'Lsat_1_v5_gn_9_119060' => 'lsa', 'Lsat_1_v5_gn_9_13800' => 'lsa', 'Lsat_1_v5_gn_9_38980' => 'lsa', 'Manes.09G117700' => 'mes', 'Manes.15G083233' => 'mes', 'Manes.16G021300' => 'mes', 'Manes.17G039650' => 'mes', 'Manes.18G126700' => 'mes', 'Mapoly0074s0026' => 'mpo', 'MBI02_g35904_MAGBIO' => 'mbi', 'MD00G1115600' => 'mdo', 'MD03G1051600' => 'mdo', 'MD04G1174500' => 'mdo', 'MD05G1324700' => 'mdo', 'MD10G1292400' => 'mdo', 'MD10G1302500' => 'mdo', 'MD11G1053500' => 'mdo', 'MD11G1053700' => 'mdo', 'MD12G1188100' => 'mdo', 'Medtr2g011940' => 'mtr', 'Medtr3g467380' => 'mtr', 'Medtr4g028130' => 'mtr', 'Medtr5g075410' => 'mtr', 'Medtr7g073240' => 'mtr', 'MELO3C007309.2' => 'cme', 'MELO3C009101.2' => 'cme', 'MELO3C020484.2' => 'cme', 'Migut.D00818' => 'egut', 'Migut.H01903' => 'egut', 'Migut.I00195' => 'egut', 'Migut.J00040' => 'egut', 'Migut.M01204' => 'egut', 'Migut.N00730' => 'egut', 'MSTRG.12710' => 'ama', 'MSTRG.17918' => 'ama', 'MSTRG.18943' => 'ama', 'MSTRG.18944' => 'ama', 'MSTRG.21255' => 'ama', 'MSTRG.5501' => 'ama', 'MSTRG.7297' => 'ama', 'Nitab4.5_0000002g0060' => 'nta', 'Nitab4.5_0000207g0260' => 'nta', 'Nitab4.5_0001320g0100' => 'nta', 'Nitab4.5_0002091g0080' => 'nta', 'Nitab4.5_0002759g0100' => 'nta', 'Nitab4.5_0003574g0070' => 'nta', 'Nitab4.5_0005329g0010' => 'nta', 'Nitab4.5_0007927g0020' => 'nta', 'Nitab4.5_0008144g0020' => 'nta', 'Nitab4.5_0009347g0030' => 'nta', 'Nn1g03916' => 'nnu', 'Nn1g06747' => 'nnu', 'Nn5g26848' => 'nnu', 'Oeu011382.3' => 'oeu', 'Oeu015571.1' => 'oeu', 'Oeu016122.2' => 'oeu', 'Oeu029203.3' => 'oeu', 'Oeu029205.1' => 'oeu', 'Oeu035266.2' => 'oeu', 'Oeu038227.1' => 'oeu', 'Oeu039791.1' => 'oeu', 'Oeu045253.1' => 'oeu', 'Oeu050159.1' => 'oeu', 'Oeu050826.1' => 'oeu', 'Oeu057983.1' => 'oeu', 'Oeu058236.1' => 'oeu', 'Oeu058237.1' => 'oeu', 'Oeu064682.1' => 'oeu', 'Os01g0713600' => 'osa', 'Os04g0676600' => 'osa', 'Os04g0676650' => 'osa', 'Os07g0563300' => 'osa', 'Os07g0679700' => 'osa', 'Os08g0101000' => 'osa', 'Peaxi162Scf00390g00329' => 'pax', 'Peaxi162Scf00588g00811' => 'pax', 'Peaxi162Scf01238g00224' => 'pax', 'PGR031G0081' => 'pgr', 'PGR042G0878' => 'pgr', 'PGR083G0646' => 'pgr', 'PGR083G2193' => 'pgr', 'PGR102G3123' => 'pgr', 'PGSC0003DMG400020238' => 'stu', 'PGSC0003DMG400022362' => 'stu', 'PGSC0003DMG400025003' => 'stu', 'PGSC0003DMG400030467' => 'stu', 'Phvul.002G229800' => 'pvu', 'Phvul.005G086100' => 'pvu', 'Phvul.006G079300' => 'pvu', 'Phvul.006G191700' => 'pvu', 'Phvul.008G247500' => 'pvu', 'Phvul.010G070200' => 'pvu', 'Potri.004G035300' => 'ptr', 'Potri.006G108300' => 'ptr', 'Potri.011G043600' => 'ptr', 'Potri.013G157500' => 'ptr', 'Potri.016G136500' => 'ptr', 'Potri.019G130300' => 'ptr', 'Pp3c11_21940' => 'ppa', 'Pp3c12_12690' => 'ppa', 'Pp3c1_26530' => 'ppa', 'Pp3c1_26600' => 'ppa', 'Pp3c3_23050' => 'ppa', 'Pp3c4_10850' => 'ppa', 'Pp3c7_7990' => 'ppa', 'Prupe.4G036100' => 'ppe', 'Prupe.4G190000' => 'ppe', 'Prupe.6G041000' => 'ppe', 'Prupe.6G293400' => 'ppe', 'Psat0s305g0160' => 'psa', 'Psat1g208240' => 'psa', 'Psat2g050920' => 'psa', 'Psat3g118960' => 'psa', 'Psat4g065360' => 'psa', 'Psat4g211480' => 'psa', 'Psat5g148000' => 'psa', 'Psat6g226880' => 'psa', 'PSO017G6913' => 'pso', 'PSO170G5970' => 'pso', 'PSO210G3498' => 'pso', 'PSO339G3843' => 'pso', 'PSO384G2240' => 'pso', 'PSO541G3340' => 'pso', 'PSO675G6889' => 'pso', 'PSO761G0138' => 'pso', 'PSO782G3906' => 'pso', 'QL01p024575' => 'qlo', 'QL03p049890' => 'qlo', 'QL05p081871' => 'qlo', 'QL07p032140' => 'qlo', 'QL08p017846' => 'qlo', 'QL08p017861' => 'qlo', 'RcHm_v2.0_Chr3g0460501' => 'rch', 'RcHm_v2.0_Chr5g0006571' => 'rch', 'RcHm_v2.0_Chr5g0008771' => 'rch', 'RcHm_v2.0_Chr5g0008831' => 'rch', 'RcHm_v2.0_Chr5g0035401' => 'rch', 'RcHm_v2.0_Chr5g0035571' => 'rch', 'RcHm_v2.0_Chr5g0035811' => 'rch', 'RcHm_v2.0_Chr5g0035901' => 'rch', 'RcHm_v2.0_Chr5g0073201' => 'rch', 'Rhsim01G0243100' => 'rsi', 'Rhsim04G0121900' => 'rsi', 'RhsimUnG0258800' => 'rsi', 'Sabra04G0021100' => 'sbr', 'Sabra06G0084500' => 'sbr', 'Sabra11G0030200' => 'sbr', 'Sabra13G0126500' => 'sbr', 'Sabra19G0127200' => 'sbr', 'SalBow2G2917' => 'sbo', 'SalBow5G5712' => 'sbo', 'SalBow7G3021' => 'sbo', 'Sc02g0000160' => 'sci', 'Sc12g0000080' => 'sci', 'Sc12g0000090' => 'sci', 'Sc12g0000100' => 'sci', 'Sc17g0006540' => 'sci', 'Sed0009051' => 'sed', 'Sed0013229' => 'sed', 'Sed0025508' => 'sed', 'Sed0027514' => 'sed', 'SEGI_02049' => 'sgi', 'SEGI_08320' => 'sgi', 'SEGI_10149' => 'sgi', 'SEGI_19728' => 'sgi', 'SEGI_21290' => 'sgi', 'SEGI_26507' => 'sgi', 'SEGI_27792' => 'sgi', 'SEGI_31715' => 'sgi', 'SEGI_41303' => 'sgi', 'SGA_v2.0_scaffold120G32988' => 'sas', 'SGA_v2.0_scaffold77G25359' => 'sas', 'SGA_v2.0_scaffold7G03957' => 'sas', 'SGA_v2.0_scaffold85G26617' => 'sas', 'SGA_v2.0_scaffold85G26623' => 'sas', 'SGA_v2.0_scaffold9G04953' => 'sas', 'SHI02065' => 'shi', 'SHI02066' => 'shi', 'SHI02067' => 'shi', 'SMO146G0111' => 'smo', 'SMO340G0023' => 'smo', 'SMO347G0165' => 'smo', 'Solyc02g079020.4' => 'sly', 'Solyc02g094460.2' => 'sly', 'Solyc06g082520.3' => 'sly', 'Solyc10g006830.4' => 'sly', 'Solyc10g075030.3' => 'sly', 'Sopen02g023830' => 'spe', 'Sopen02g039120' => 'spe', 'Sopen06g033900' => 'spe', 'Sopen10g002750' => 'spe', 'Sopen10g027510' => 'spe', 'Sp4g13000' => 'spa', 'Sp7g19680' => 'spa', 'Sp7g29810' => 'spa', 'TAR624G0569' => 'tar', 'TAR624G0998' => 'tar', 'TAR626G1889' => 'tar', 'TAR633G2285' => 'tar', 'THA.LOC104800790' => 'tha', 'THA.LOC104815824' => 'tha', 'THA.LOC104823319' => 'tha', 'THA.LOC104827397' => 'tha', 'Thecc.04G151800' => 'tca', 'Thecc.06G198000' => 'tca', 'Thecc.07G071200' => 'tca', 'Thecc.09G364000' => 'tca', 'Thhalv10016263m.g' => 'esa', 'Thhalv10024481m.g' => 'esa', 'Thhalv10024526m.g' => 'esa', 'TPR.G10877' => 'tpr', 'TPR.G13896' => 'tpr', 'TPR.G18304' => 'tpr', 'TPR.G36725' => 'tpr', 'TPR.G4971' => 'tpr', 'TWI38G2152' => 'twi', 'TWI38G2402' => 'twi', 'TWI39G1275' => 'twi', 'TWI53G1037' => 'twi', 'TWI74G1052' => 'twi', 'TWI75G0892' => 'twi', 'TWI79G1685' => 'twi', 'unitig_0.g208' => 'ugi', 'unitig_0.g209' => 'ugi', 'unitig_26.g10222' => 'ugi', 'unitig_26.g10223' => 'ugi', 'unitig_748.g8006' => 'ugi', 'unitig_749.g13448' => 'ugi', 'unitig_8.g3268' => 'ugi', 'unitig_8.g3269' => 'ugi', 'vmacro03825' => 'vma', 'vmacro03826' => 'vma', 'vmacro08937' => 'vma', 'vmacro09560' => 'vma', 'vmacro14639' => 'vma', 'vmacro15869' => 'vma', 'VMungo0251G3471' => 'vmu', 'VMungo0331G1817' => 'vmu', 'VMungo0540G0290' => 'vmu', 'VMungo0540G2318' => 'vmu', 'VMungo0647G1289' => 'vmu', 'VMungo0647G1875' => 'vmu', 'Zm00001eb106940' => 'zma', 'Zm00001eb111570' => 'zma', 'Zm00001eb181930' => 'zma', 'Zm00001eb259870' => 'zma', 'Zm00001eb287620' => 'zma', 'Zm00001eb324300' => 'zma', 'Zm00001eb330690' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001107' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001107' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001107' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001107' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151