Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold70G23688 scaffold70 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G2370 LG-8 + View
Aethionema arabicum Aa31LG3G10010 LG-3 + View
Acer truncatum Atru.chr10.1779 chr10 + View
Acer truncatum Atru.chr2.2405 chr2 + View
Actinidia chinensis Actinidia16576 Lachesis_group0 - View
Actinidia chinensis Actinidia35239 Lachesis_group2 + View
Actinidia chinensis Actinidia05660 Lachesis_group20 - View
Actinidia chinensis Actinidia39485 Lachesis_group17 - View
Actinidia chinensis Actinidia18776 Lachesis_group9 + View
Arabidopsis lyrata AL3G27560 scaffold_3 + View
Amaranthus hybridus Ah.04g164560 AmaHy_arrow1_Scaffold_4 + View
Aquilegia oxysepala Aqoxy4G00690 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XB6K25 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.B9XEKF PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT5G53950 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Transcriptional activator of the NAC gene family%2C with CUC1 redundantly required for embryonic apical meristem formation%2C cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. CUP-SHAPED COTYLEDON 2 (CUC2)%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G15170 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl%2C auxins%2C ethylene). %3Ci%3ECuc%3C/i%3E mutant was first recognized at the heart stage%2C where embryos lacking two distinct bulges of cotyledonary primordia were observed. CUP-SHAPED COTYLEDON1 (CUC1)%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G53950.1)%3B Has 3039 Blast hits to 3031 proteins in 75 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3039%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC03g14365 ChrC03 + View
Brassica carinata BcaB06g29540 ChrB06 + View
Brassica carinata BcaC09g48476 ChrC09 + View
Brassica carinata BcaC04g20401 ChrC04 + View
Brassica carinata BcaB05g22094 ChrB05 - View
Brassica napus A02p10670 A02 + View
Brassica napus C02p17800 C02 + View
Brassica napus C01p49390 C01 - View
Brassica napus C05p52070 C05 - View
Brassica napus A03p39190 A03 + View
Brassica napus A10p11320 A10 - View
Brassica oleracea BolC1t04896H C1 - View
Brassica oleracea BolC9t57283H C9 - View
Brassica oleracea BolC5t33892H C5 - View
Brassica oleracea BolC2t07909H C2 + View
Brassica rapa BraA03t13068Z A03 + View
Brassica rapa BraA10t43223Z A10 - View
Brassica rapa BraA02t06130Z A02 + View
Beta vulgaris EL10Ac4g08242 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0035736 hypothetical protein POPTR_0011s05760g [Populus trichocarpa] Chr8 - View
Camellia sinensis var. sinensis CSS0044735 PREDICTED: protein FEZ-like [Populus euphratica] Chr8 - View
Capsicum annuum CAN.G162.35 PGAv.1.6.scaffold162 + View
Cannabis sativa CANSAT35G0864 NC_044378.1 + View
Cicer arietinum L. Ca_18568_v3 Ca_LG6_v3 - View
Corylus avellana Haze_09408 Similar to NAC098: Protein CUP-SHAPED COTYLEDON 2 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc05_g11720 Protein CUP-SHAPED COTYLEDON 2 chr5 + View
Citrus clementina Ciclev10010568m.g scaffold_1 - View
Cardamine hirsuta CARHR267090 NAC domain protein, Chr8 - View
Cardamine hirsuta CARHR090150 NAC domain protein, Chr3 + View
Carya illinoinensis CiPaw.12G117100 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr12 + View
Carya illinoinensis CiPaw.11G167600 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr11 + View
Citrullus lanatus ClCG05G009250 NAC domain protein, CG_Chr05 + View
Citrullus lanatus ClCG11G017790 NAC domain protein CG_Chr11 + View
Cucumis melo MELO3C019401.2 NAC domain protein, chr06 + View
Cucumis melo MELO3C025611.2 NAC domain protein, chr07 + View
Chenopodium quinoa AUR62036158 NAC098: Protein CUP-SHAPED COTYLEDON 2 C_Quinoa_Scaffold_2702 + View
Chenopodium quinoa AUR62019477 NAC098: Protein CUP-SHAPED COTYLEDON 2 C_Quinoa_Scaffold_2127 - View
Capsella rubella Carub.0003s1482 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED scaffold_3 + View
Capsella rubella Carub.0008s1426 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED scaffold_8 - View
Cucumis sativus L. CsaV3_4G033430 NAC domain containing protein chr4 + View
Daucus carota DCAR_019571 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_020996 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_013122 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv14939 GWHABJS00000001 + View
Davidia involucrata Dinv20205 GWHABJS00000013 - View
Durio zibethinus Duzib213G0879 NW_019167993.1 - View
Durio zibethinus Duzib268G1713 NW_019168270.1 - View
Durio zibethinus Duzib192G0226 NW_019168037.1 - View
Durio zibethinus Duzib170G0951 NW_019167871.1 - View
Durio zibethinus Duzib235G0016 NW_019167982.1 + View
Erigeron canadensis ECA234G1102 Conyza_canadensis_scaffold:4 + View
Erigeron canadensis ECA236G2500 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.F01170 Chr06 - View
Erythranthe guttata Migut.M00779 scaffold_13 + View
Erythranthe guttata Migut.H01960 scaffold_8 - View
Eutrema salsugineum Thhalv10021186m.g PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED scaffold_13 - View
Eutrema salsugineum Thhalv10013863m.g PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED scaffold_2 + View
Fragaria x ananassa FAN25G2268 PTHR31744//PTHR31744:SF22 - FAMILY NOT NAMED // PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Fvb3-1 - View
Fragaria x ananassa FAN21G2186 PTHR31744//PTHR31744:SF22 - FAMILY NOT NAMED // PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Fvb3-2 - View
Fragaria x ananassa FAN11G0934 PTHR31744//PTHR31744:SF22 - FAMILY NOT NAMED // PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Fvb3-4 - View
Fragaria vesca FvH4_3g19410 PTHR31744//PTHR31744:SF22 - FAMILY NOT NAMED // PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Fvb3 + View
Gossypium hirsutum Gohir.A01G061200 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED A01 + View
Gossypium hirsutum Gohir.A10G028350 PF02365 - No apical meristem (NAM) protein (NAM) A10 - View
Gossypium hirsutum Gohir.D10G028750 PF02365 - No apical meristem (NAM) protein (NAM) D10 - View
Gossypium hirsutum Gohir.D01G047700 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED D01 + View
Gossypium hirsutum Gohir.A11G286000 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED A11 + View
Gossypium hirsutum Gohir.D13G152134 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED D13 - View
Glycine max Glyma.13G274300 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Gm13 + View
Glycine max Glyma.12G226500 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Gm12 - View
Glycine max Glyma.06G236000 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Gm06 + View
Glycine max Glyma.12G161700 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Gm12 + View
Gossypium raimondii Gorai.002G067300 Chr02 + View
Gossypium raimondii Gorai.013G171300 Chr13 - View
Gossypium raimondii Gorai.011G030600 Chr11 - View
Helianthus annuus HanXRQChr03g0070611 Probable NAC (No Apical Meristem) domain transcriptional regulator superfamily protein HanXRQChr03 + View
Helianthus annuus HanXRQChr10g0302591 Putative NAC domain HanXRQChr10 + View
Lupinus albus Lalb_Chr19g0134051 PTHR31744//PTHR31744:SF22 - FAMILY NOT NAMED // PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Lalb_Chr19 + View
Lupinus albus Lalb_Chr20g0109531 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Lalb_Chr20 + View
Lotus japonicus Lj3g0022117 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED chr3 - View
Lotus japonicus Lj3g0019574 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED chr3 - View
Lonicera japonica Lj8P154T30 GWHAAZE00000008 + View
Lonicera japonica Lj1A838T32 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_5_127660 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_7_104460 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Lsat_1_v8_lg_7 - View
Malus domestica MD11G1253500 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Chr11 - View
Malus domestica MD11G1239900 NAC domain containing protein 2 Chr11 - View
Manihot esculenta Manes.17G050100 Chromosome17 - View
Manihot esculenta Manes.15G089700 Chromosome15 - View
Manihot esculenta Manes.03G105700 Chromosome03 + View
Medicago truncatula Medtr2g078700 CUP-shaped cotyledon protein, putative chr2 + View
Nelumbo nucifera Nn1g04183 chr1 + View
Nelumbo nucifera Nn1g06441 chr1 + View
Nicotiana tabacum Nitab4.5_0002330g0090 NAC domain Nitab4.5_0002330 - View
Olea europaea Oeu051089.1 chr6 + View
Petunia axillaris Peaxi162Scf00069g01832 NAC domain protein, Peaxi162Scf00069 - View
Prunus persica Prupe.4G175800 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Pp04 + View
Papaver somniferum PSO675G1353 NC_039358.1 - View
Papaver somniferum PSO541G6265 NC_039363.1 + View
Populus trichocarpa Potri.001G396300 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr01 + View
Populus trichocarpa Potri.011G058600 PTHR31719//PTHR31719:SF9 - FAMILY NOT NAMED // ATNAC2-RELATED Chr11 - View
Populus trichocarpa Potri.004G049500 PF02365 - No apical meristem (NAM) protein (NAM) Chr04 - View
Populus trichocarpa Potri.011G115400 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr11 + View
Phaseolus vulgaris Phvul.005G074500 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED Chr05 - View
Quercus lobata QL08p023902 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0032661 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0202800 chr06 - View
Salix brachista Sabra16G0259500 GWHAAZH00000016 + View
Salix brachista Sabra11G0101100 GWHAAZH00000011 + View
Salix brachista Sabra04G0031200 GWHAAZH00000004 - View
Simmondsia chinensis Sc16g0007190 GWHAASQ00000016 - View
Simmondsia chinensis Sc03g0010210 GWHAASQ00000003 - View
Sechium edule Sed0010071 LG05 + View
Sechium edule Sed0010922 LG04 - View
Solanum lycopersicum Solyc07g062840.3 goblet SL4.0ch07 + View
Schrenkiella parvula Sp6g16030 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED ch6-6 - View
Schrenkiella parvula Sp3g13380 PTHR31744:SF22 - PROTEIN CUP-SHAPED COTYLEDON 1-RELATED ch3-1 + View
Solanum pennellii Sopen07g031040 Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. | CUP-SHAPED COTYLEDON 2 (CUC2) | CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein | BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400012403 NO APICAL MERISTEM ST4.03ch07 + View
Trochodendron aralioides TAR627G0697 group6 + View
Trochodendron aralioides TAR626G1367 group3 - View
Trochodendron aralioides TAR629G0724 group0 - View
Theobroma cacao Thecc.07G097000 NAC domain protein Chromosome_7 - View
Tarenaya hassleriana THA.LOC104811874 protein CUP-SHAPED COTYLEDON 2 NW_010965372.1 - View
Trifolium pratense TPR.G7966 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI39G0113 NC_052250.1 - View
Tripterygium wilfordii TWI38G1761 NC_052252.1 + View
Vaccinium macrocarpon vmacro11891 Similar to NAC098: Protein CUP-SHAPED COTYLEDON 2 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G1217 CM024079.1 - View
Vitis vinifera GSVIVG01014287001 chr19 + View