Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold4G02059 scaffold4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1220 LG-8 + View
Actinidia chinensis Actinidia21786 Lachesis_group1 + View
Actinidia chinensis Actinidia39089 Lachesis_group9 + View
Actinidia chinensis Actinidia32174 Lachesis_group27 - View
Arabidopsis lyrata AL3G26210 scaffold_3 + View
Arabidopsis lyrata AL1G62890 scaffold_1 - View
Avicennia marina MSTRG.9512 ScioBoG_12795_HRSCAF_12848 - View
Avicennia marina MSTRG.4785 ScioBoG_102837_HRSCAF_103074 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.62L32R KOG2375 - Protein interacting with poly(A)-binding protein arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.S9YVIH KOG2375 - Protein interacting with poly(A)-binding protein arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT3G14010 CTC-interacting domain 4 hydroxyproline-rich glycoprotein family protein%2C similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae)%3B weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. CTC-interacting domain 4 (CID4)%3B CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1)%3B Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9%3B Bacteria - 1476%3B Metazoa - 3492%3B Fungi - 1698%3B Plants - 664%3B Viruses - 94%3B Other Eukaryotes - 5733 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT1G54170 CTC-interacting domain 3 ataxin-2-related%2C similar to SCA2 (GI:1770390) (Homo sapiens)%3B similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. CTC-interacting domain 3 (CID3)%3B CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 4 (TAIR:AT3G14010.3)%3B Has 939 Blast hits to 759 proteins in 220 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 423%3B Fungi - 216%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 149 (source: NCBI BLink). Chr1 - View
Camellia sinensis var. sinensis CSS0016093 PREDICTED: polyadenylate-binding protein-interacting protein 4 isoform X1 [Vitis vinifera] Chr15 + View
Capsicum annuum CAN.G862.25 PGAv.1.6.scaffold862 - View
Cannabis sativa CANSAT56G4312 NC_044371.1 - View
Cicer arietinum L. Ca_01232_v3 Ca_LG1_v3 - View
Corylus avellana Haze_16008 Similar to CID3: Polyadenylate-binding protein-interacting protein 3 (Arabidopsis thaliana OX%3D3702) 11 - View
Citrus clementina Ciclev10025086m.g scaffold_7 - View
Carpinus fangiana Cfa003546 Cfa01 + View
Cardamine hirsuta CARHR088820 CTC-interacting domain 4 protein Chr3 + View
Carya illinoinensis CiPaw.02G137000 KOG2375 - Protein interacting with poly(A)-binding protein Chr02 + View
Carica papaya Cpa.g.sc25.97 supercontig_25 - View
Capsella rubella Carub.0003s1359 KOG2375 - Protein interacting with poly(A)-binding protein scaffold_3 + View
Capsella rubella Carub.0001s4341 KOG2375 - Protein interacting with poly(A)-binding protein scaffold_1 - View
Daucus carota DCAR_016132 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_007631 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv37877 GWHABJS00000006 - View
Durio zibethinus Duzib192G0343 NW_019168037.1 + View
Durio zibethinus Duzib235G0409 NW_019167982.1 - View
Erigeron canadensis ECA234G2908 Conyza_canadensis_scaffold:4 + View
Erythranthe guttata Migut.D00945 scaffold_4 + View
Eutrema salsugineum Thhalv10020519m.g PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) scaffold_13 - View
Fragaria x ananassa FAN02G3680 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-4 - View
Fragaria x ananassa FAN05G2950 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-3 + View
Fragaria x ananassa FAN09G4047 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-2 + View
Fragaria x ananassa FAN14G0986 KOG2375 - Protein interacting with poly(A)-binding protein Fvb6-1 + View
Gossypium hirsutum Gohir.A06G192700 KOG2375 - Protein interacting with poly(A)-binding protein A06 - View
Gossypium hirsutum Gohir.D06G200600 KOG2375 - Protein interacting with poly(A)-binding protein D06 - View
Glycine max Glyma.13G346900 PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Gm13 + View
Glycine max Glyma.15G027500 PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Gm15 - View
Gossypium raimondii Gorai.010G234100 Chr10 - View
Helianthus annuus HanXRQChr10g0312291 Probable CTC-interacting domain 3 HanXRQChr10 + View
Hydrangea macrophylla Hma1.2p1_0496F.1_g166130 Hma1.2p1_0496F.1 - View
Hydrangea macrophylla Hma1.2p1_0291F.1_g115240 Hma1.2p1_0291F.1 + View
Lupinus albus Lalb_Chr14g0372621 PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) Lalb_Chr14 + View
Lupinus albus Lalb_Chr24g0396621 PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Lalb_Chr24 - View
Lotus japonicus Lj3g0018176 PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) chr3 - View
Lotus japonicus Lj3g0017349 PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) chr3 + View
Lonicera japonica Lj5C39G2 GWHAAZE00000005 + View
Lonicera japonica Lj9A522G71 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_4_93821 Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_5_135681 Lsat_1_v8_lg_5 - View
Malus domestica MD09G1186100 CTC-interacting domain 4 Chr09 + View
Malus domestica MD17G1171000 CTC-interacting domain 4 Chr17 + View
Manihot esculenta Manes.11G022200 Chromosome11 + View
Manihot esculenta Manes.04G142700 Chromosome04 - View
Medicago truncatula Medtr2g099480 CTC-interacting domain protein, putative chr2 + View
Nelumbo nucifera Nn8g38728 chr8 + View
Olea europaea Oeu058715.1 chr10 + View
Petunia axillaris Peaxi162Scf00207g01431 CTC-interacting domain 4 Peaxi162Scf00207 - View
Petunia axillaris Peaxi162Scf00038g01820 CTC-interacting domain 4 Peaxi162Scf00038 - View
Punica granatum PGR102G1386 NC_045129.1 - View
Populus trichocarpa Potri.001G171100 KOG2375 - Protein interacting with poly(A)-binding protein Chr01 + View
Phaseolus vulgaris Phvul.005G156000 PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Chr05 + View
Phaseolus vulgaris Phvul.010G133101 Chr10 + View
Rhododendron simsii Rhsim12G0208800 chr12 - View
Rhododendron simsii Rhsim08G0237100 chr08 - View
Salvia bowleyana SalBow7G3930 GWHASIU00000005 - View
Salix brachista Sabra03G0036700 GWHAAZH00000003 - View
Sechium edule Sed0005467 LG06 + View
Sechium edule Sed0027854 LG06 - View
Solanum lycopersicum Solyc03g121950.3 Polyadenylate-binding protein-interacting protein 3 (AHRD V3.3 *** A0A2G2WPZ4_CAPBA) SL4.0ch03 - View
Solanum lycopersicum Solyc06g062860.4 Polyadenylate-binding protein-interacting protein 4 (AHRD V3.3 *-* A0A2G3C8H0_CAPCH) SL4.0ch06 - View
Schrenkiella parvula Sp1g40620 KOG2375 - Protein interacting with poly(A)-binding protein ch1-2 - View
Solanum pennellii Sopen03g040770 hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (Saccharomyces cerevisiae) | weak similarity to ataxin-2 related protein (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | CTC-interacting domain 4 (CID4) | FUNCTIONS IN: protein binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: LsmAD domain , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 . Spenn-ch03 - View
Solanum pennellii Sopen06g022320 hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (Saccharomyces cerevisiae) | weak similarity to ataxin-2 related protein (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | CTC-interacting domain 4 (CID4) | FUNCTIONS IN: protein binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: LsmAD domain , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 . Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400004888 Conserved gene of unknown function ST4.03ch06 + View
Trochodendron aralioides TAR383G0203 group10 - View
Trochodendron aralioides TAR626G1385 group3 + View
Tarenaya hassleriana THA.LOC104815625 polyadenylate-binding protein-interacting protein 3 isoform X1 NW_010965696.1 - View
Tarenaya hassleriana THA.LOC104810365 polyadenylate-binding protein-interacting protein 3-like isoform X1 NW_010965216.1 + View
Trifolium pratense TPR.G6601 Tp57577_TGAC_v2_LG7 - View
Vaccinium macrocarpon vmacro17050 Similar to CID4: Polyadenylate-binding protein-interacting protein 4 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G0053 CM024079.1 - View