Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold122G33310 scaffold122 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1560 LG-8 + View
Actinidia chinensis Actinidia21835 Lachesis_group1 - View
Actinidia chinensis Actinidia24430 Lachesis_group27 + View
Arabidopsis lyrata AL3G26610 scaffold_3 + View
Arabidopsis lyrata AL1G62560 scaffold_1 - View
Avicennia marina MSTRG.22517 ScioBoG_3703_HRSCAF_3719 - View
Avicennia marina MSTRG.9541 ScioBoG_12795_HRSCAF_12848 + View
Avicennia marina MSTRG.10913 ScioBoG_14204_HRSCAF_14270 - View
Arabidopsis thaliana AT3G14290 20S proteasome alpha subunit E2 Encodes 20S proteasome subunit PAE2 (PAE2) that has RNase activity. 20S proteasome alpha subunit E2 (PAE2)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C cytosolic ribosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C alpha-subunit%2C conserved site (InterPro:IPR000426)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit E1 (TAIR:AT1G53850.2)%3B Has 8015 Blast hits to 8011 proteins in 570 species: Archae - 901%3B Bacteria - 216%3B Metazoa - 2770%3B Fungi - 1923%3B Plants - 1008%3B Viruses - 0%3B Other Eukaryotes - 1197 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT1G53850 20S proteasome alpha subunit E1 Encodes alpha5 subunit of 20s proteosome involved in protein degradation and RNA degradation. 20S proteasome alpha subunit E1 (PAE1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to cadmium ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C cytosolic ribosome%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C alpha-subunit%2C conserved site (InterPro:IPR000426)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit E2 (TAIR:AT3G14290.1)%3B Has 7954 Blast hits to 7950 proteins in 569 species: Archae - 901%3B Bacteria - 213%3B Metazoa - 2759%3B Fungi - 1863%3B Plants - 1012%3B Viruses - 0%3B Other Eukaryotes - 1206 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g43563 ChrC08 - View
Brassica napus C03p91780 C03 - View
Brassica napus C06p09620 C06 - View
Brassica napus A06p00740 A06 + View
Brassica oleracea BolC6t36034H C6 - View
Camellia sinensis var. sinensis CSS0009948 PREDICTED: uncharacterized protein LOC100260045 [Vitis vinifera] Chr15 + View
Coffea canephora Cc04_g00740 Proteasome subunit alpha type-5 chr4 - View
Carpinus fangiana Cfa003463 Cfa01 - View
Cardamine hirsuta CARHR089220 Proteasome subunit alpha type Chr3 + View
Cardamine hirsuta CARHR044180 Proteasome subunit alpha type Chr1 - View
Carya illinoinensis CiPaw.02G131200 PF03763 - Remorin, C-terminal region (Remorin_C) Chr02 - View
Carya illinoinensis CiPaw.02G134600 K02730 - 20S proteasome subunit alpha 1 (PSMA6) Chr02 + View
Citrullus lanatus ClCG07G014300 Remorin family protein LENGTH=442 CG_Chr07 - View
Chenopodium quinoa AUR62001408 At3g61260: Uncharacterized protein At3g61260 C_Quinoa_Scaffold_2716 - View
Capsella rubella Carub.0001s4313 K02729 - 20S proteasome subunit alpha 5 (PSMA5) scaffold_1 - View
Cucumis sativus L. CsaV3_3G031000 DNA binding protein chr3 + View
Daucus carota DCAR_016091 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv37820 GWHABJS00000006 + View
Durio zibethinus Duzib235G0075 NW_019167982.1 + View
Durio zibethinus Duzib187G1428 NW_019167860.1 - View
Durio zibethinus Duzib160G0218 NW_019168015.1 + View
Durio zibethinus Duzib192G0206 NW_019168037.1 - View
Erigeron canadensis ECA232G4668 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA234G3069 Conyza_canadensis_scaffold:4 - View
Erythranthe guttata Migut.D00912 scaffold_4 - View
Erythranthe guttata Migut.I01129 scaffold_9 + View
Glycine max Glyma.07G045800 PF03763 - Remorin, C-terminal region (Remorin_C) Gm07 + View
Helianthus annuus HanXRQChr09g0277241 Probable proteasome subunit alpha type-5 HanXRQChr09 + View
Hydrangea macrophylla Hma1.2p1_0291F.1_g114895 Hma1.2p1_0291F.1 + View
Lupinus albus Lalb_Chr10g0101111 PF03763 - Remorin, C-terminal region (Remorin_C) Lalb_Chr10 - View
Lupinus albus Lalb_Chr17g0343241 PF03763 - Remorin, C-terminal region (Remorin_C) Lalb_Chr17 - View
Lupinus albus Lalb_Chr04g0253921 PF03763 - Remorin, C-terminal region (Remorin_C) Lalb_Chr04 + View
Lotus japonicus Lj3g0018226 PF03763 - Remorin, C-terminal region (Remorin_C) chr3 + View
Lonicera japonica Lj5A29G59 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_1_39200 PF03763 - Remorin, C-terminal region (Remorin_C) Lsat_1_v8_lg_1 + View
Lactuca sativa Lsat_1_v5_gn_4_92260 PF03763 - Remorin, C-terminal region (Remorin_C) Lsat_1_v8_lg_4 + View
Magnolia biondii MBI13_g01693_MAGBIO AED:0.03 Chr13 - View
Manihot esculenta Manes.11G012800 Chromosome11 - View
Manihot esculenta Manes.04G150700 Chromosome04 + View
Punica granatum PGR119G2259 NC_045132.1 + View
Prunus persica Prupe.3G031200 PF03763 - Remorin, C-terminal region (Remorin_C) Pp03 - View
Pisum sativum Psat4g165480 Remorin + C-terminal region chr4LG4 - View
Populus trichocarpa Potri.001G162900 K02729 - 20S proteasome subunit alpha 5 (PSMA5) Chr01 - View
Quercus lobata QL05p001260 5 - View
Rhododendron simsii Rhsim08G0244500 chr08 + View
Rhododendron simsii Rhsim12G0213200 chr12 + View
Salvia bowleyana SalBow6G5970 GWHASIU00000002 + View
Salix brachista Sabra03G0043300 GWHAAZH00000003 + View
Simmondsia chinensis Sc15g0000800 GWHAASQ00000015 + View
Simmondsia chinensis Sc10g0008000 GWHAASQ00000010 + View
Schrenkiella parvula Sp1g40340 K02729 - 20S proteasome subunit alpha 5 (PSMA5) ch1-2 - View
Selenicereus undatus Hund18639 Scaffold_33675 - View
Theobroma cacao Thecc.06G129800 Remorin family protein Chromosome_6 + View
Tarenaya hassleriana THA.LOC104810585 uncharacterized protein LOC104810585 NW_010965216.1 + View
Tarenaya hassleriana THA.LOC104815597 proteasome subunit alpha type-5-B NW_010965696.1 - View
Tripterygium wilfordii TWI59G0435 NC_052248.1 - View
Vaccinium macrocarpon vmacro15085 Similar to At3g61260: Uncharacterized protein At3g61260 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0415 CM024078.1 + View
Vitis vinifera GSVIVG01016670001 chr9 - View