Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold44G16580 scaffold44 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr1.924 chr1 - View
Actinidia chinensis Actinidia13617 Lachesis_group3 + View
Actinidia chinensis Actinidia31663 Lachesis_group22 - View
Actinidia chinensis Actinidia31769 Lachesis_group21 + View
Actinidia chinensis Actinidia01040 Lachesis_group3 + View
Arabidopsis lyrata AL8G10830 scaffold_8 - View
Avicennia marina MSTRG.27224 ScioBoG_8578_HRSCAF_8617 - View
Avicennia marina MSTRG.8852 ScioBoG_11560_HRSCAF_11609 - View
Avicennia marina MSTRG.8402 ScioBoG_102841_HRSCAF_103114 + View
Avicennia marina MSTRG.144 ScioBoG_102831_HRSCAF_103044 - View
Arabidopsis thaliana AT5G47200 RAB GTPase homolog 1A AtRabD2b encodes a Rab GTPase%2C which plays important roles in pollen development%2C germination and tube elongation. RAB GTPase homolog 1A (RAB1A)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1C (TAIR:AT4G17530.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC06g31408 ChrC06 - View
Brassica carinata BcaC06g34277 ChrC06 - View
Brassica napus A06p45210 A06 - View
Brassica napus C07p30890 C07 + View
Corylus avellana Haze_22213 Similar to YPTM2: GTP-binding protein YPTM2 (Zea mays OX%3D4577) 3 - View
Coffea canephora Cc02_g04810 Ras-related protein RABD2a chr2 - View
Ceratophyllum demersum CDE04G1140 2 + View
Ceratophyllum demersum CDE12G0547 10 - View
Carpinus fangiana Cfa013595 Cfa05 - View
Carya illinoinensis CiPaw.08G042200 K07874 - Ras-related protein Rab-1A (RAB1A) Chr08 - View
Citrullus lanatus ClCG07G017070 Ras-related protein Rab-1A CG_Chr07 - View
Cucumis melo MELO3C017637.2 Ras-related GTP-binding protein chr07 + View
Cucumis sativus L. CsaV3_4G004290 Ras-related protein like chr4 - View
Daucus carota DCAR_029472 hypothetical protein DCARv2_Chr9 - View
Davidia involucrata Dinv34549 GWHABJS00000009 - View
Davidia involucrata Dinv16874 GWHABJS00000004 - View
Durio zibethinus Duzib084G1299 NW_019167827.1 + View
Durio zibethinus Duzib068G0309 NW_019167838.1 + View
Durio zibethinus Duzib205G0362 NW_019168381.1 + View
Erigeron canadensis ECA233G5107 Conyza_canadensis_scaffold:1 - View
Erythranthe guttata Migut.F00532 scaffold_6 - View
Erythranthe guttata Migut.F01205 scaffold_6 - View
Eutrema salsugineum Thhalv10001029m.g K07874 - Ras-related protein Rab-1A (RAB1A) scaffold_20 + View
Fragaria x ananassa FAN06G5032 K07874 - Ras-related protein Rab-1A (RAB1A) Fvb7-2 + View
Fragaria x ananassa FAN03G0814 K07874 - Ras-related protein Rab-1A (RAB1A) Fvb7-3 - View
Fragaria x ananassa FAN01G1027 K07874 - Ras-related protein Rab-1A (RAB1A) Fvb7-4 - View
Fragaria x ananassa FAN10G0190 K07874 - Ras-related protein Rab-1A (RAB1A) Fvb7-1 + View
Fragaria vesca FvH4_7g26840 PTHR24073//PTHR24073:SF520 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABD2B-RELATED Fvb7 + View
Gossypium hirsutum Gohir.A12G195950 PTHR24073//PTHR24073:SF520 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABD2B-RELATED A12 + View
Gossypium hirsutum Gohir.D12G198733 PTHR24073//PTHR24073:SF520 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABD2B-RELATED D12 + View
Gossypium raimondii Gorai.008G213500 Chr08 + View
Helianthus annuus HanXRQChr08g0223051 Putative small GTPase superfamily; Ran GTPase; Small GTPase superfamily, ARF type; P-loop containing nucleoside triphosphate hydrolase HanXRQChr08 - View
Hydrangea macrophylla Hma1.2p1_1305F.1_g274560 Hma1.2p1_1305F.1 + View
Lonicera japonica Lj8A48T44 GWHAAZE00000008 - View
Lonicera japonica Lj1A975T27 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_14060 Lsat_1_v8_lg_8 - View
Malus domestica MD01G1176600 RAB GTPase homolog 1A Chr01 + View
Malus domestica MD07G1247800 RAB GTPase homolog 1A Chr07 + View
Manihot esculenta Manes.06G130700 Chromosome06 + View
Manihot esculenta Manes.14G039500 Chromosome14 - View
Nelumbo nucifera Nn6g33812 chr6 + View
Nicotiana tabacum Nitab4.5_0002211g0020 Small GTPase superfamily, ARF type, Small GTP-binding protein domain, Small GTPase superfamily, Ran GTPase, Small GTPase superfamily, Rho type, P-loop containing nucleoside triphosphate hydrolase, Small GTPase superfamily, Rab type, Small GTPase superfamily, Ras type Nitab4.5_0002211 + View
Nicotiana tabacum Nitab4.5_0002236g0050 Small GTPase superfamily, P-loop containing nucleoside triphosphate hydrolase, Ran GTPase, Small GTPase superfamily, ARF type, Small GTPase superfamily, Rab type, Small GTPase superfamily, Ras type, Small GTPase superfamily, Rho type, Small GTP-binding protein domain Nitab4.5_0002236 - View
Olea europaea Oeu044192.2 chr1 + View
Oryza sativa ssp. japonica Os02g0653800 Similar to GTP-binding protein. chr02 + View
Petunia axillaris Peaxi162Scf00304g01020 RAB GTPase homolog 1C Peaxi162Scf00304 + View
Punica granatum PGR042G2211 NC_045130.1 - View
Prunus persica Prupe.2G271800 PTHR24073:SF520 - RAS-RELATED PROTEIN RABD2B-RELATED Pp02 + View
Populus trichocarpa Potri.001G080400 K07874 - Ras-related protein Rab-1A (RAB1A) Chr01 - View
Populus trichocarpa Potri.014G049400 K07874 - Ras-related protein Rab-1A (RAB1A) Chr14 - View
Quercus lobata QL09p027722 9 + View
Rosa chinensis RcHm_v2.0_Chr1g0373531 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0160100 chr03 + View
Rhododendron simsii Rhsim09G0189300 chr09 + View
Salvia bowleyana SalBow3G1303 GWHASIU00000006 - View
Salvia bowleyana SalBow3G0321 GWHASIU00000006 - View
Sechium edule Sed0001340 LG07 + View
Sechium edule Sed0007583 LG13 - View
Solanum lycopersicum Solyc05g052070.3 small GTP-binding protein C SL4.0ch05 - View
Schrenkiella parvula Sp2g12000 K07874 - Ras-related protein Rab-1A (RAB1A) ch2-4 + View
Solanum pennellii Sopen05g030620 Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. | RAS 5 (RA-5) | FUNCTIONS IN: GTP binding | INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTP-binding protein , Small GTPase , Ras , Ras small GTPase, Rab type | BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A Spenn-ch05 - View
Solanum pennellii Sopen01g035960 Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. | RAS 5 (RA-5) | FUNCTIONS IN: GTP binding | INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTP-binding protein , Small GTPase , Ras , Ras small GTPase, Rab type | BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400016002 Small GTP-binding protein ST4.03ch05 - View
Trochodendron aralioides TAR375G1112 group15 + View
Trochodendron aralioides TAR636G2635 group1 - View
Theobroma cacao Thecc.03G147500 RAB GTPaseC Chromosome_3 + View
Tarenaya hassleriana THA.LOC104812813 ras-related protein RABD2c-like NW_010965372.1 - View
Tripterygium wilfordii TWI39G0092 NC_052250.1 + View
Tripterygium wilfordii TWI14G0805 NC_052249.1 + View
Utricularia gibba unitig_46.g18761 unitig_46 + View
Utricularia gibba unitig_0.g2512 unitig_0 - View
Vaccinium macrocarpon vmacro09925 Similar to YPTM2: GTP-binding protein YPTM2 (Zea mays OX%3D4577) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro06841 Similar to RABD2A: Ras-related protein RABD2a (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01013868001 chr16 + View