Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold413G51185 scaffold413 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G12470 LG-5 - View
Acer truncatum Atru.chr8.287 chr8 - View
Actinidia chinensis Actinidia17556 Lachesis_group21 - View
Actinidia chinensis Actinidia26227 Lachesis_group3 - View
Arabidopsis lyrata AL3G11110 scaffold_3 - View
Amaranthus hybridus Ah.10g031680 Polypyrimidine tract-binding protein homolog 1 AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy3G03436 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0CS5BR K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) arahy.Tifrunner.gnm1.Arahy.10 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.X0E42N arahy.Tifrunner.gnm1.Arahy.20 - View
Arabidopsis thaliana AT3G01150 polypyrimidine tract-binding protein 1 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. polypyrimidine tract-binding protein 1 (PTB1)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2 (TAIR:AT5G53180.1)%3B Has 1792 Blast hits to 964 proteins in 150 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1278%3B Fungi - 41%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 170 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0564G528 AmTr_v1.0_scaffold00010 - View
Brassica napus A05p44810 A05 - View
Brassica napus C09p75400 C09 - View
Brassica oleracea BolC5t35120H C5 + View
Brassica rapa BraA05t23176Z A05 + View
Beta vulgaris EL10Ac2g02997 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr2_EL10_PGA_scaffold6 - View
Camellia sinensis var. sinensis CSS0033630 Polypyrimidine tract-binding protein-1-like protein [Morus notabilis] Chr2 - View
Camellia sinensis var. sinensis CSS0023463 PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Prunus mume] Chr1 + View
Cannabis sativa CANSAT64G0124 NC_044379.1 - View
Corylus avellana Haze_14510 Similar to PTB: Polypyrimidine tract-binding protein homolog 1 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc07_g03500 Polypyrimidine tract binding protein, putative chr7 - View
Citrus clementina Ciclev10011680m.g scaffold_6 - View
Carpinus fangiana Cfa007576 Cfa03 - View
Cardamine hirsuta CARHR075900 Polypyrimidine tract-binding Chr3 - View
Carya illinoinensis CiPaw.04G016000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr04 + View
Carya illinoinensis CiPaw.03G025000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr03 + View
Chenopodium quinoa AUR62034430 PTB: Polypyrimidine tract-binding protein homolog 1 C_Quinoa_Scaffold_2742 - View
Capsella rubella Carub.0003s0101 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) scaffold_3 - View
Daucus carota DCAR_011087 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv11515 GWHABJS00000012 + View
Durio zibethinus Duzib187G0861 NW_019167860.1 - View
Durio zibethinus Duzib264G0800 NW_019167960.1 - View
Eucalyptus grandis Eucgr.J01358 Chr10 - View
Eutrema salsugineum Thhalv10020700m.g KOG1190 - Polypyrimidine tract-binding protein scaffold_13 + View
Fragaria x ananassa FAN09G4689 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Fvb6-2 - View
Fragaria x ananassa FAN05G4163 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Fvb6-3 + View
Fragaria x ananassa FAN02G1974 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Fvb6-4 + View
Fragaria x ananassa FAN14G4918 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Fvb6-1 - View
Gossypium hirsutum Gohir.A05G367800 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) A05 - View
Gossypium hirsutum Gohir.A09G014400 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) A09 + View
Gossypium hirsutum Gohir.D04G047500 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) D04 + View
Gossypium hirsutum Gohir.D09G012900 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) D09 + View
Glycine max Glyma.18G261000 KOG0131//KOG1190 - Splicing factor 3b, subunit 4 // Polypyrimidine tract-binding protein Gm18 - View
Gossypium raimondii Gorai.006G014900 Chr06 + View
Gossypium raimondii Gorai.012G052900 Chr12 + View
Lupinus albus Lalb_Chr02g0159301 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Lalb_Chr02 + View
Lotus japonicus Lj1g0004442 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) chr1 + View
Lotus japonicus Lj2g0015851 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) chr2 + View
Lonicera japonica Lju41A10G41 GWHAAZE00000094 + View
Malus domestica MD09G1053000 polypyrimidine tract-binding protein 1 Chr09 - View
Medicago truncatula Medtr6g012590 polypyrimidine tract-binding-like protein chr6 - View
Medicago truncatula Medtr7g011070 polypyrimidine tract-binding-like protein chr7 - View
Nelumbo nucifera Nn3g17283 chr3 - View
Nicotiana tabacum Nitab4.5_0000568g0060 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain Nitab4.5_0000568 - View
Prunus persica Prupe.3G265700 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Pp03 + View
Pisum sativum Psat3g200200 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr3LG5 + View
Populus trichocarpa Potri.017G085400 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr17 - View
Phaseolus vulgaris Phvul.008G037600 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr08 - View
Phaseolus vulgaris Phvul.004G030300 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr04 + View
Quercus lobata QL02p082558 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr2g0167691 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0070500 chr08 - View
Rhododendron simsii Rhsim10G0036800 chr10 + View
Salix brachista Sabra17G0075400 GWHAAZH00000017 - View
Simmondsia chinensis Sc10g0003490 GWHAASQ00000010 + View
Solanum lycopersicum Solyc02g088110.4 Polypyrimidine tract-binding protein (AHRD V3.3 *** B6U4H8_MAIZE) SL4.0ch02 - View
Schrenkiella parvula Sp3g00970 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) ch3-1 - View
Solanum pennellii Sopen02g032820 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. | POLYPYRIMIDINE TRACT-BINDING (PTB) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation | LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2 Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400001427 Polypyrimidine tract-binding protein ST4.03ch02 + View
Selenicereus undatus Hund13200 Scaffold_33679 + View
Trochodendron aralioides TAR622G0930 group8 - View
Trochodendron aralioides TAR629G3422 group0 + View
Theobroma cacao Thecc.04G085000 Polypyrimidine tract-binding protein 1 Chromosome_4 - View
Tarenaya hassleriana THA.LOC104821024 polypyrimidine tract-binding protein homolog 1 isoform X1 NW_010966372.1 + View
Trifolium pratense TPR.G33570 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI32G1171 NC_052254.1 - View
Tripterygium wilfordii TWI34G1059 NC_052235.1 + View
Tripterygium wilfordii TWI60G0678 NC_052246.1 - View
Vaccinium macrocarpon vmacro05685 Similar to PTB: Polypyrimidine tract-binding protein homolog 1 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G0034 CM024070.1 + View
Vitis vinifera GSVIVG01011438001 chr14 - View