Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold287G47209 scaffold287 + View
SGA_v2.0_scaffold52G19056 scaffold52 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr8.683 chr8 + View
Acer truncatum Atru.chr11.1520 chr11 - View
Arabidopsis lyrata AL2G27940 scaffold_2 - View
Avicennia marina MSTRG.2964 ScioBoG_102835_HRSCAF_103059 - View
Amaranthus hybridus Ah.10g038340 WPP domain-interacting tail-anchored protein 1 AmaHy_arrow1_Scaffold_10 + View
Aquilegia oxysepala Aqoxy3G00575 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AT6RDF PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT1G68910 WPP domain-interacting protein 2 Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390%2C WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes%2C including nucleocytoplasmic transport%2C spindle formation%2C and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins%2C structurally similar%2C yet clearly distinct from the WIP family%2C that is required for RanGAP nuclear envelop association in root tip cells. WPP domain-interacting protein 2 (WIT2)%3B BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 1 (TAIR:AT5G11390.1)%3B Has 80562 Blast hits to 45263 proteins in 2523 species: Archae - 1211%3B Bacteria - 12854%3B Metazoa - 37741%3B Fungi - 6730%3B Plants - 4174%3B Viruses - 347%3B Other Eukaryotes - 17505 (source: NCBI BLink). WPP domain-interacting protein 2 (WIT2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 1 (TAIR:AT5G11390.1). Chr1 - View
Brassica napus A02p15490 A02 - View
Brassica rapa BraA02t06610Z A02 - View
Camellia sinensis var. sinensis CSS0034394 PREDICTED: WPP domain-interacting tail-anchored protein 1 [Vitis vinifera] Chr2 + View
Capsicum annuum CAN.G93.45 PGAv.1.6.scaffold93 - View
Cannabis sativa CANSAT64G2265 NC_044379.1 - View
Corylus avellana Haze_14356 Similar to WIT1: WPP domain-interacting tail-anchored protein 1 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc11_g11350 Putative WPP domain-interacting tail-anchored protein 2 chr11 - View
Coffea canephora Cc07_g04670 Putative WPP domain-interacting tail-anchored protein 1 chr7 + View
Carpinus fangiana Cfa007718 Cfa03 + View
Carya illinoinensis CiPaw.03G080900 PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Chr03 - View
Carya illinoinensis CiPaw.04G050900 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Chr04 - View
Citrullus lanatus ClCG07G016160 Tropomyosin CG_Chr07 + View
Chenopodium quinoa AUR62009452 WIT1: WPP domain-interacting tail-anchored protein 1 C_Quinoa_Scaffold_3674 - View
Chenopodium quinoa AUR62023133 WIT1: WPP domain-interacting tail-anchored protein 1 C_Quinoa_Scaffold_1189 - View
Capsella rubella Carub.0002s1555 PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 scaffold_2 - View
Davidia involucrata Dinv34891 GWHABJS00000012 - View
Durio zibethinus Duzib251G0850 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019167971.1 - View
Durio zibethinus Duzib248G1050 NW_019168048.1 + View
Durio zibethinus Duzib211G0355 NW_019168049.1 + View
Erigeron canadensis ECA238G2894 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.J01428 Chr10 + View
Erythranthe guttata Migut.L01147 scaffold_12 - View
Erythranthe guttata Migut.H00573 scaffold_8 - View
Fragaria x ananassa FAN05G4529 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Fvb6-3 - View
Fragaria x ananassa FAN09G1126 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Fvb6-2 - View
Fragaria x ananassa FAN07G0888 PTHR35705:SF2 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 Fvb4-4 + View
Fragaria vesca FvH4_6g46070 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Fvb6 + View
Glycine max Glyma.18G276900 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Gm18 + View
Glycine max Glyma.19G037700 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Gm19 + View
Glycine max Glyma.13G050900 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Gm13 - View
Gossypium raimondii Gorai.013G098800 Chr13 + View
Helianthus annuus HanXRQChr07g0200081 Uncharacterized protein, partly conserved in plant genome(s), supported by expression data HanXRQChr07 + View
Lupinus albus Lalb_Chr21g0318111 PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Lalb_Chr21 - View
Lupinus albus Lalb_Chr10g0099321 PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 Lalb_Chr10 + View
Lotus japonicus Lj1g0012113 PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 chr1 - View
Lotus japonicus Lj2g0020384 PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 chr2 - View
Lonicera japonica Lj4P127T26 GWHAAZE00000004 + View
Lonicera japonica Lj6A772G33 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_2_86020 Lsat_1_v8_lg_2 - View
Magnolia biondii MBI15_g42002_MAGBIO AED:0.04 Chr15 + View
Magnolia biondii MBI14_g08213_MAGBIO AED:0.06 Chr14 + View
Malus domestica MD17G1067700 WPP domain-interacting protein 1 Chr17 - View
Malus domestica MD09G1077300 WPP domain-interacting protein 1 Chr09 - View
Manihot esculenta Manes.01G105100 Chromosome01 + View
Manihot esculenta Manes.02G061500 Chromosome02 + View
Medicago truncatula Medtr7g017690 WPP domain interacting tail-anchored protein chr7 + View
Olea europaea Oeu062192.1 chr10 + View
Olea europaea Oeu033419.1 chr2 - View
Punica granatum PGR042G0929 NC_045130.1 - View
Punica granatum PGR119G2480 NC_045132.1 - View
Prunus persica Prupe.3G246700 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Pp03 + View
Populus trichocarpa Potri.010G135900 PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 Chr10 - View
Populus trichocarpa Potri.004G111350 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Chr04 - View
Phaseolus vulgaris Phvul.004G045500 PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 Chr04 + View
Phaseolus vulgaris Phvul.008G024000 Chr08 - View
Rosa chinensis RcHm_v2.0_Chr2g0164391 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0078700 chr08 + View
Salvia bowleyana SalBow1G0101 GWHASIU00000001 - View
Salix brachista Sabra04G0073100 GWHAAZH00000004 + View
Salix brachista Sabra17G0089400 GWHAAZH00000017 + View
Simmondsia chinensis Sc04g0007270 GWHAASQ00000004 + View
Simmondsia chinensis Sc10g0000490 GWHAASQ00000010 - View
Solanum lycopersicum Solyc02g065660.4 WPP domain-interacting tail-anchored protein 2 (AHRD V3.3 *** A0A1J3JZ59_NOCCA) SL4.0ch02 - View
Solanum pennellii Sopen02g015870 Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells. | WPP domain-interacting protein 1 (WIT1) | BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 2 Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400026559 Conserved gene of unknown function ST4.03ch02 - View
Selenicereus undatus Hund16254 Scaffold_33677 + View
Trochodendron aralioides TAR629G3028 group0 - View
Theobroma cacao Thecc.04G110800 WPP domain-interacting protein 1 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104805537 WPP domain-interacting tail-anchored protein 1-like isoform X1 NW_010961290.1 + View
Trifolium pratense TPR.G15931 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI34G0100 NC_052235.1 - View
Utricularia gibba unitig_52.g17630 unitig_52 + View
Vigna mungo VMungo0464G2033 CM024077.1 + View
Vigna mungo VMungo1383G1347 CM024070.1 - View