Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold16G07838 scaffold16 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G12870 LG-5 - View
Acer truncatum Atru.chr1.467 chr1 + View
Acer truncatum Atru.BG.291.p chr11 + View
Acer truncatum Atru.chr8.684 chr8 - View
Acer truncatum Atru.chr5.491 chr5 + View
Actinidia chinensis Actinidia35058 Lachesis_group2 - View
Actinidia chinensis Actinidia10043 Lachesis_group0 - View
Actinidia chinensis Actinidia33437 Lachesis_group16 - View
Arabidopsis lyrata AL2G27960 scaffold_2 + View
Arabidopsis lyrata AL3G11620 scaffold_3 - View
Avicennia marina MSTRG.2963 ScioBoG_102835_HRSCAF_103059 + View
Avicennia marina MSTRG.7720 ScioBoG_102841_HRSCAF_103114 + View
Aquilegia oxysepala Aqoxy3G00580 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0J1699 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.14 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ECU3UP PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.04 + View
Arabidopsis thaliana AT2G03880 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1)%3B Has 41924 Blast hits to 14587 proteins in 276 species: Archae - 3%3B Bacteria - 26%3B Metazoa - 84%3B Fungi - 128%3B Plants - 40967%3B Viruses - 0%3B Other Eukaryotes - 716 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G30540 Glycosyl hydrolase superfamily protein Glycosyl hydrolase superfamily protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 5 (InterPro:IPR001547)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10900.1)%3B Has 710 Blast hits to 700 proteins in 174 species: Archae - 7%3B Bacteria - 189%3B Metazoa - 0%3B Fungi - 183%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT3G02330 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1)%3B Has 56701 Blast hits to 14050 proteins in 283 species: Archae - 2%3B Bacteria - 22%3B Metazoa - 148%3B Fungi - 141%3B Plants - 55528%3B Viruses - 0%3B Other Eukaryotes - 860 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT1G68930 pentatricopeptide (PPR) repeat-containing protein pentatricopeptide (PPR) repeat-containing protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1)%3B Has 47331 Blast hits to 14466 proteins in 272 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 110%3B Fungi - 135%3B Plants - 46381%3B Viruses - 0%3B Other Eukaryotes - 685 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC09g47693 ChrC09 - View
Brassica oleracea BolC1t05912H C1 + View
Beta vulgaris EL10Ac5g11202 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0014262 PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Chr3 + View
Camellia sinensis var. sinensis CSS0025927 PREDICTED: pentatricopeptide repeat-containing protein At1g18485 [Vitis vinifera] Chr2 + View
Cannabis sativa CANSAT64G0996 NC_044379.1 + View
Cicer arietinum L. Ca_04394_v3 Ca_LG2_v3 - View
Corylus avellana Haze_14355 Similar to PCMP-E90: Pentatricopeptide repeat-containing protein At3g02330, mitochondrial (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc11_g11370 Putative pentatricopeptide repeat-containing protein At1g68930 chr11 + View
Coffea canephora Cc07_g04680 Pentatricopeptide repeat-containing protein At3g02330 chr7 - View
Citrus clementina Ciclev10018700m.g scaffold_3 - View
Citrus clementina Ciclev10013459m.g scaffold_6 + View
Carpinus fangiana Cfa003966 Cfa01 - View
Carpinus fangiana Cfa007719 Cfa03 - View
Cardamine hirsuta CARHR076310 Pentatricopeptide repeat-containing protein Chr3 - View
Carya illinoinensis CiPaw.03G080800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr03 + View
Citrullus lanatus ClCG06G015350 Pentatricopeptide repeat protein CG_Chr06 + View
Cucumis melo MELO3C017260.2 pentatricopeptide repeat-containing protein At1g18485 chr02 + View
Capsella rubella Carub.0002s1557 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_2 + View
Capsella rubella Carub.0003s0144 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_3 - View
Cucumis sativus L. CsaV3_1G003230 pentatricopeptide repeat-containing protein At1g18485 chr1 + View
Daucus carota DCAR_025464 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv28448 GWHABJS00000004 + View
Durio zibethinus Duzib251G0862 NW_019167971.1 + View
Durio zibethinus Duzib147G0521 NW_019168470.1 + View
Durio zibethinus Duzib138G0886 NW_019167893.1 - View
Durio zibethinus Duzib211G0053 NW_019168049.1 - View
Erigeron canadensis ECA246G2547 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA246G2963 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.I02086 Chr09 - View
Eucalyptus grandis Eucgr.B00648 Chr02 - View
Erythranthe guttata Migut.H00572 scaffold_8 + View
Erythranthe guttata Migut.L01150 scaffold_12 + View
Fragaria x ananassa FAN02G0037 PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Fvb6-4 + View
Fragaria x ananassa FAN09G2532 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-2 - View
Fragaria x ananassa FAN05G1793 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-3 - View
Fragaria vesca FvH4_6g45980 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6 + View
Glycine max Glyma.04G158200 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Gm04 + View
Glycine max Glyma.06G206900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm06 - View
Gossypium raimondii Gorai.013G098500 Chr13 - View
Helianthus annuus HanXRQChr06g0165461 Putative pentatricopeptide repeat HanXRQChr06 + View
Lotus japonicus Lj1g0002838 PF01535 - PPR repeat (PPR) chr1 + View
Lotus japonicus Lj1g0019122 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr1 + View
Lotus japonicus Lj1g0005612 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr1 + View
Lonicera japonica Lj5C98T12 GWHAAZE00000005 - View
Lonicera japonica Lj8C25G8 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_7_4121 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_7 + View
Magnolia biondii MBI14_g08212_MAGBIO AED:0.09 Chr14 - View
Magnolia biondii MBI15_g26769_MAGBIO AED:0.61 Chr15 - View
Malus domestica MD06G1207000 Pentatricopeptide repeat (PPR) superfamily protein Chr06 - View
Malus domestica MD01G1200000 Tetratricopeptide repeat (TPR)-like superfamily protein Chr01 - View
Malus domestica MD09G1077700 Pentatricopeptide repeat (PPR) superfamily protein Chr09 - View
Malus domestica MD17G1068000 Pentatricopeptide repeat (PPR) superfamily protein Chr17 - View
Manihot esculenta Manes.05G112800 Chromosome05 + View
Manihot esculenta Manes.01G024600 Chromosome01 + View
Manihot esculenta Manes.02G018500 Chromosome02 - View
Manihot esculenta Manes.02G061600 Chromosome02 - View
Medicago truncatula Medtr7g017700 PPR containing plant-like protein chr7 - View
Medicago truncatula Medtr3g026690 PPR containing plant-like protein chr3 - View
Nelumbo nucifera Nn4g23581 chr4 - View
Olea europaea Oeu032845.1 chr18 - View
Olea europaea Oeu041519.1 chr3 + View
Olea europaea Oeu062193.1 chr10 - View
Oryza sativa ssp. japonica Os03g0216400 Pentatricopeptide repeat domain containing protein. chr03 - View
Punica granatum PGR004G1382 NC_045131.1 + View
Punica granatum PGR031G3835 NC_045127.1 + View
Punica granatum PGR083G0726 NC_045133.1 - View
Prunus persica Prupe.3G245900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp03 + View
Prunus persica Prupe.2G293600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Pp02 - View
Papaver somniferum PSO478G2081 NC_039361.1 + View
Populus trichocarpa Potri.010G136200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr10 + View
Populus trichocarpa Potri.004G111300 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 + View
Phaseolus vulgaris Phvul.008G023900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr08 + View
Phaseolus vulgaris Phvul.004G044000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 + View
Phaseolus vulgaris Phvul.009G204200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr09 + View
Rosa chinensis RcHm_v2.0_Chr4g0437811 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim10G0061100 chr10 - View
Salvia bowleyana SalBow3G2614 GWHASIU00000006 + View
Salix brachista Sabra04G0073200 GWHAAZH00000004 - View
Simmondsia chinensis Sc10g0000480 GWHAASQ00000010 + View
Sechium edule Sed0021977 LG11 - View
Sechium edule Sed0015333 LG08 - View
Solanum lycopersicum Solyc03g025700.2 Pentatricopeptide repeat-containing protein, chloroplastic (AHRD V3.3 *** A0A2G2X6K3_CAPBA) SL4.0ch03 + View
Solanum lycopersicum Solyc03g114660.1 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G3A1V3_CAPAN) SL4.0ch03 + View
Solanum lycopersicum Solyc06g035600.3 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QK42_9MAGN) SL4.0ch06 + View
Schrenkiella parvula Sp3g01390 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch3-1 - View
Schrenkiella parvula Sp1g12560 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 ch1-1 - View
Solanum pennellii Sopen03g004520 Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch03 + View
Solanum pennellii Sopen03g033730 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG402024517 Pentatricopeptide repeat-containing protein ST4.03ch03 + View
Trochodendron aralioides TAR629G2803 group0 - View
Trochodendron aralioides TAR375G0023 group15 - View
Trochodendron aralioides TAR374G1557 group12 - View
Theobroma cacao Thecc.04G110900 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_4 - View
Tarenaya hassleriana THA.LOC104821986 putative pentatricopeptide repeat-containing protein At1g68930 NW_010966617.1 + View
Tarenaya hassleriana THA.LOC104802995 pentatricopeptide repeat-containing protein At1g31430 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104827144 pentatricopeptide repeat-containing protein At3g02330 NW_010967707.1 - View
Tarenaya hassleriana THA.LOC104818376 pentatricopeptide repeat-containing protein At5g08305 NW_010966092.1 - View
Trifolium pratense TPR.G3273 Tp57577_TGAC_v2_scaf_82 - View
Tripterygium wilfordii TWI34G0230 NC_052235.1 + View
Vigna mungo VMungo1383G0459 CM024070.1 + View
Vitis vinifera GSVIVG01008173001 chr17 + View