Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold73G24381 scaffold73 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G2390 LG-4 - View
Actinidia chinensis Actinidia39415 Lachesis_group5 - View
Avicennia marina MSTRG.12857 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.14986 ScioBoG_19538_HRSCAF_19626 - View
Arabidopsis thaliana AT1G78570 rhamnose biosynthesis 1 Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose%2C a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in %3Ci%3EE. coli%3C/i%3E. rhamnose biosynthesis 1 (RHM1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913)%3B BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 3 (TAIR:AT3G14790.1)%3B Has 54880 Blast hits to 54585 proteins in 3085 species: Archae - 917%3B Bacteria - 31981%3B Metazoa - 1168%3B Fungi - 566%3B Plants - 1527%3B Viruses - 106%3B Other Eukaryotes - 18615 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC08g44094 ChrC08 - View
Brassica napus A06p12900 A06 - View
Brassica napus C06p52470 C06 + View
Brassica oleracea BolC5t30239H C5 - View
Beta vulgaris EL10Ac4g08424 4.2.1.76 - UDP-glucose 4,6-dehydratase Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0007309 PREDICTED: probable rhamnose biosynthetic enzyme 1 [Nelumbo nucifera] Chr7 - View
Cannabis sativa CANSAT56G0890 NC_044371.1 + View
Chenopodium quinoa AUR62019659 RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 C_Quinoa_Scaffold_2127 - View
Capsella rubella Carub.0002s2542 4.2.1.76 - UDP-glucose 4,6-dehydratase scaffold_2 + View
Daucus carota DCAR_021044 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv13359 GWHABJS00000001 + View
Davidia involucrata Dinv26704 GWHABJS00000013 - View
Durio zibethinus Duzib213G0076 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019167993.1 - View
Erigeron canadensis ECA236G1076 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA240G2561 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.F03231 Chr06 + View
Erythranthe guttata Migut.M00690 scaffold_13 + View
Erythranthe guttata Migut.H02027 scaffold_8 - View
Fragaria x ananassa FAN25G1070 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-1 - View
Fragaria x ananassa FAN11G2275 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-4 - View
Fragaria x ananassa FAN21G3219 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-2 + View
Fragaria x ananassa FAN16G3609 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-3 + View
Gossypium hirsutum Gohir.A01G047050 PTHR10366:SF385 - RHAMNOSE BIOSYNTHETIC ENZYME 1-RELATED A01 + View
Glycine max Glyma.13G264500 K12450 - UDP-glucose 4,6-dehydratase (RHM) Gm13 + View
Lotus japonicus Lj3g0005710 4.2.1.76 - UDP-glucose 4,6-dehydratase chr3 - View
Lonicera japonica Lj8A145T74 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_7_100181 Lsat_1_v8_lg_7 + View
Nicotiana tabacum Nitab4.5_0001140g0170 dTDP-glucose 4,6-dehydratase, NAD(P)-binding domain, NAD-dependent epimerase/dehydratase, dTDP-4-dehydrorhamnose reductase Nitab4.5_0001140 + View
Olea europaea Oeu058451.1 chr21 - View
Petunia axillaris Peaxi162Scf00111g01320 dTDP-D-glucose 4,6-dehydratase Peaxi162Scf00111 + View
Prunus persica Prupe.4G155800 K12450 - UDP-glucose 4,6-dehydratase (RHM) Pp04 + View
Rhododendron simsii RhsimUnG0206500 ctg509 + View
Solanum lycopersicum Solyc10g007480.4 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (AHRD V3.3 *** A0A2I4GY66_9ROSI) SL4.0ch10 - View
Solanum lycopersicum Solyc07g062130.3 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (AHRD V3.3 *** A0A2I4GY66_9ROSI) SL4.0ch07 + View
Solanum pennellii Sopen10g003420 Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400007059 RHM1/ROL1 ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400021254 Rhamnose synthase ST4.03ch10 - View
Tarenaya hassleriana THA.LOC104810424 trifunctional UDP-glucose 4%2C6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3%2C5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 NW_010965216.1 + View
Tripterygium wilfordii TWI32G1127 NC_052254.1 + View
Vaccinium macrocarpon vmacro11975 Similar to RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01014091001 chr19 + View