Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold5G02559 scaffold5 - View
SGA_v2.0_scaffold68G22982 scaffold68 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G140 LG-4 - View
Aethionema arabicum Aa31LG8G3270 LG-8 + View
Actinidia chinensis Actinidia21678 Lachesis_group1 - View
Actinidia chinensis Actinidia32732 Lachesis_group27 + View
Actinidia chinensis Actinidia24742 Lachesis_group9 - View
Arabidopsis lyrata AL1G60410 scaffold_1 - View
Arabidopsis lyrata AL2G41700 scaffold_2 + View
Arabidopsis lyrata AL3G28810 scaffold_3 + View
Amaranthus hybridus Ah.01g021610 Rop guanine nucleotide exchange factor 12 (AtRopGEF12) (Protein MATERNAL EFFECT EMBRYO ARREST 64) (Rho of plants guanine nucleotide exchange factor 12) AmaHy_arrow1_Scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7NM7T6 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) arahy.Tifrunner.gnm1.Arahy.07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q4G4US PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) arahy.Tifrunner.gnm1.Arahy.09 + View
Arabidopsis thaliana AT1G79860 RHO guanyl-nucleotide exchange factor 12 Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth. RHO guanyl-nucleotide exchange factor 12 (ROPGEF12)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1)%3B Has 305 Blast hits to 303 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G52240 rop guanine nucleotide exchange factor-like protein Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily . RHO guanyl-nucleotide exchange factor 11 (ROPGEF11)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%2C Dynein light chain%2C type 1/2 (InterPro:IPR001372)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 13 (TAIR:AT3G16130.1)%3B Has 1099 Blast hits to 1098 proteins in 168 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 490%3B Fungi - 40%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 82 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G16130 RHO guanyl-nucleotide exchange factor 13 Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily. RHO guanyl-nucleotide exchange factor 13 (ROPGEF13)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1)%3B Has 315 Blast hits to 313 proteins in 20 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 0%3B Plants - 304%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC08g43973 ChrC08 - View
Brassica napus A01p37970 A01 - View
Brassica napus A05p19110 A05 + View
Brassica napus C01p48200 C01 - View
Brassica napus C06p13730 C06 - View
Brassica napus C03p90510 C03 - View
Brassica oleracea BolC6t36545H C6 - View
Brassica oleracea BolC5t33785H C5 - View
Brassica oleracea BolC1t04784H C1 - View
Brassica rapa BraA01t03857Z A01 - View
Brassica rapa BraA05t20814Z A05 + View
Camellia sinensis var. sinensis CSS0011598 PREDICTED: rop guanine nucleotide exchange factor 12-like isoform X1 [Nicotiana tomentosiformis] Chr15 - View
Camellia sinensis var. sinensis CSS0024857 unnamed protein product [Coffea canephora] Chr2 - View
Cicer arietinum L. Ca_01129_v3 Ca_LG1_v3 + View
Corylus avellana Haze_16365 Similar to ROPGEF12: Rop guanine nucleotide exchange factor 12 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc04_g03060 Rho guanine nucleotide exchange factor 8 chr4 - View
Citrus clementina Ciclev10027341m.g scaffold_7 - View
Ceratophyllum demersum CDE04G1280 2 + View
Carpinus fangiana Cfa002092 Cfa01 + View
Cardamine hirsuta CARHR042370 RHO guanyl-nucleotide exchange factor 11 Chr1 - View
Cardamine hirsuta CARHR074630 Rop guanine nucleotide exchange factor Chr2 + View
Cardamine hirsuta CARHR091290 RHO guanyl-nucleotide exchange factor 13 Chr3 + View
Carya illinoinensis CiPaw.02G149000 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Chr02 - View
Citrullus lanatus ClCG09G001960 Rop guanine nucleotide exchange factor CG_Chr09 - View
Citrullus lanatus ClCG07G013140 Rop guanine nucleotide exchange factor 1 CG_Chr07 + View
Cucumis melo MELO3C024254.2 Rop guanine nucleotide exchange factor chr01 + View
Cucumis melo MELO3C012970.2 Rop guanine nucleotide exchange factor chr04 + View
Corchorus olitorius COL.COLO4_30433 Plant specific Rop nucleotide exchanger%2C PRONE AWUE01020729.1 + View
Chenopodium quinoa AUR62021476 ROPGEF8: Rho guanine nucleotide exchange factor 8 C_Quinoa_Scaffold_2862 - View
Chenopodium quinoa AUR62016478 ROPGEF12: Rop guanine nucleotide exchange factor 12 C_Quinoa_Scaffold_3514 + View
Chenopodium quinoa AUR62011650 ROPGEF12: Rop guanine nucleotide exchange factor 12 C_Quinoa_Scaffold_3333 + View
Capsella rubella Carub.0001s4121 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED scaffold_1 - View
Capsella rubella Carub.0002s2764 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED scaffold_2 + View
Capsella rubella Carub.0003s1587 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED scaffold_3 + View
Cucumis sativus L. CsaV3_7G033400 Rop guanine nucleotide exchange factor like chr7 + View
Cucumis sativus L. CsaV3_3G025010 Rop guanine nucleotide exchange factor like chr3 - View
Daucus carota DCAR_007569 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv38025 GWHABJS00000006 + View
Durio zibethinus Duzib235G1198 NW_019167982.1 + View
Erigeron canadensis ECA234G0507 Conyza_canadensis_scaffold:4 - View
Erigeron canadensis ECA247G0070 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.F03037 Chr06 + View
Eucalyptus grandis Eucgr.J02959 Chr10 - View
Erythranthe guttata Migut.D01018 scaffold_4 - View
Eutrema salsugineum Thhalv10021916m.g PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED scaffold_13 - View
Eutrema salsugineum Thhalv10018421m.g scaffold_9 + View
Fragaria x ananassa FAN05G2880 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Fvb6-3 - View
Fragaria x ananassa FAN09G2602 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Fvb6-2 - View
Fragaria x ananassa FAN14G3819 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Fvb6-1 - View
Fragaria vesca FvH4_6g31730 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Fvb6 + View
Gossypium hirsutum Gohir.A02G120800 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED A02 - View
Gossypium hirsutum Gohir.A05G131600 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED A05 + View
Gossypium hirsutum Gohir.D10G070200 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED D10 - View
Gossypium hirsutum Gohir.D05G131100 PTHR33101//PTHR33101:SF10 - FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED D05 + View
Glycine max Glyma.08G204900 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Gm08 - View
Glycine max Glyma.13G357400 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Gm13 - View
Glycine max Glyma.07G019800 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Gm07 - View
Glycine max Glyma.15G016200 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Gm15 + View
Gossypium raimondii Gorai.011G074500 Chr11 - View
Gossypium raimondii Gorai.009G134800 Chr09 + View
Helianthus annuus HanXRQChr10g0313441 Putative PRONE domain HanXRQChr10 + View
Lupinus albus Lalb_Chr14g0373241 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Lalb_Chr14 - View
Lupinus albus Lalb_Chr04g0262791 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Lalb_Chr04 + View
Lupinus albus Lalb_Chr01g0012991 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Lalb_Chr01 + View
Lupinus albus Lalb_Chr22g0351361 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Lalb_Chr22 + View
Lotus japonicus Lj3g0003496 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) chr3 - View
Lotus japonicus Lj3g0009785 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) chr3 - View
Lonicera japonica Lj9A509T92 GWHAAZE00000009 - View
Lonicera japonica Lj5C58T15 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_1_35220 Lsat_1_v8_lg_1 + View
Lactuca sativa Lsat_1_v5_gn_5_130880 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED Lsat_1_v8_lg_5 + View
Magnolia biondii MBI04_g19173_MAGBIO AED:0.10 Chr04 + View
Malus domestica MD17G1191500 RHO guanyl-nucleotide exchange factor 12 Chr17 - View
Manihot esculenta Manes.11G038000 Chromosome11 + View
Manihot esculenta Manes.04G129800 Chromosome04 + View
Petunia axillaris Peaxi162Scf00015g00037 ROP guanine nucleotide exchange factor 5 Peaxi162Scf00015 + View
Punica granatum PGR102G2950 NC_045129.1 + View
Populus trichocarpa Potri.003G052600 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Chr03 - View
Phaseolus vulgaris Phvul.005G168700 PF03759 - PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) Chr05 + View
Phaseolus vulgaris Phvul.010G148900 Chr10 - View
Quercus lobata QL05p021788 5 - View
Rhododendron simsii Rhsim08G0223200 chr08 + View
Salvia bowleyana SalBow2G0702 GWHASIU00000007 + View
Salix brachista Sabra01G0155500 GWHAAZH00000001 - View
Simmondsia chinensis Sc12g0009450 GWHAASQ00000012 + View
Sechium edule Sed0016061 LG07 - View
Sechium edule Sed0027333 LG06 + View
Sechium edule Sed0019622 LG05 + View
Solanum lycopersicum Solyc03g120650.4 GDP-mannose pyrophosphorylase SL4.0ch03 - View
Schrenkiella parvula Sp5g35910 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED ch5-7 + View
Schrenkiella parvula Sp1g38780 PF01221//PF03759 - Dynein light chain type 1 (Dynein_light) // PRONE (Plant-specific Rop nucleotide exchanger) (PRONE) ch1-2 - View
Schrenkiella parvula Sp3g14490 PTHR33101:SF10 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED ch3-1 + View
Solanum tuberosum PGSC0003DMG400046768 Pollen-specific kinase partner protein ST4.03ch12 + View
Solanum tuberosum PGSC0003DMG400002546 Pollen-specific kinase partner protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400016533 Pollen-specific kinase partner protein ST4.03ch06 - View
Selenicereus undatus Hund06630 Scaffold_33676 + View
Selenicereus undatus Hund00642 Scaffold_33678 + View
Theobroma cacao Thecc.06G092100 RHO guanyl-nucleotide exchange factor 12 Chromosome_6 + View
Trifolium pratense TPR.G37253 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI12G0211 NC_052243.1 + View
Tripterygium wilfordii TWI75G0305 NC_052253.1 - View
Vaccinium macrocarpon vmacro18889 Similar to ROPGEF12: Rop guanine nucleotide exchange factor 12 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0331G0984 CM024078.1 + View
Vigna mungo VMungo1080G0535 CM024079.1 + View
Vitis vinifera GSVIVG01017070001 chr9 + View