Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold68G23010 scaffold68 + View
SGA_v2.0_scaffold5G02597 scaffold5 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G290 LG-4 + View
Aethionema arabicum Aa31LG10G2550 LG-10 - View
Aethionema arabicum Aa31LG8G3130 LG-8 - View
Acer truncatum Atru.chr1.3251 chr1 + View
Actinidia chinensis Actinidia24762 Lachesis_group9 + View
Actinidia chinensis Actinidia32763 Lachesis_group27 - View
Arabidopsis lyrata AL3G28630 scaffold_3 - View
Arabidopsis lyrata AL1G60610 scaffold_1 + View
Arabidopsis lyrata AL2G41550 scaffold_2 - View
Avicennia marina MSTRG.9453 ScioBoG_12795_HRSCAF_12848 - View
Avicennia marina MSTRG.11084 ScioBoG_14204_HRSCAF_14270 + View
Amaranthus hybridus Ah.01g021250 AmaHy_arrow1_Scaffold_1 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3FE9AW K17302 - coatomer, subunit beta' (COPB2, SEC27) arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT1G52360 Coatomer, beta' subunit Coatomer%2C beta' subunit%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: membrane coat%2C COPI vesicle coat%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Coatomer%2C WD associated region (InterPro:IPR006692)%2C Cytochrome cd1-nitrite reductase-like%2C C-terminal haem d1 (InterPro:IPR011048)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Coatomer%2C beta%26apos%3B subunit (InterPro:IPR016453)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Coatomer%2C beta' subunit (TAIR:AT3G15980.3)%3B Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64%3B Bacteria - 8410%3B Metazoa - 31451%3B Fungi - 17403%3B Plants - 9943%3B Viruses - 42%3B Other Eukaryotes - 10413 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G79990 coatomer subunit beta-2 structural molecules%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: membrane coat%2C endomembrane system%2C COPI vesicle coat%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Coatomer%2C WD associated region (InterPro:IPR006692)%2C WD40 repeat (InterPro:IPR001680)%2C Integral membrane protein SYS1-related (InterPro:IPR019185)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Coatomer%2C beta' subunit (TAIR:AT1G52360.1)%3B Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58%3B Bacteria - 8441%3B Metazoa - 30042%3B Fungi - 16255%3B Plants - 9898%3B Viruses - 0%3B Other Eukaryotes - 10180 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G15980 Coatomer, beta' subunit Coatomer%2C beta' subunit%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: membrane coat%2C COPI vesicle coat%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Coatomer%2C WD associated region (InterPro:IPR006692)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C Coatomer%2C beta' subunit (InterPro:IPR016453)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Coatomer%2C beta' subunit (TAIR:AT1G52360.1)%3B Has 77112 Blast hits to 32696 proteins in 822 species: Archae - 74%3B Bacteria - 8637%3B Metazoa - 30981%3B Fungi - 17314%3B Plants - 9768%3B Viruses - 0%3B Other Eukaryotes - 10338 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC08g43990 ChrC08 + View
Brassica carinata BcaC01g03846 ChrC01 + View
Brassica carinata BcaC09g48577 ChrC09 - View
Brassica napus A01p38140 A01 + View
Brassica napus A05p19050 A05 - View
Brassica napus C06p13950 C06 + View
Brassica napus C03p90630 C03 + View
Brassica napus C01p48390 C01 + View
Brassica napus C03p47990 C03 - View
Brassica oleracea BolC1t04799H C1 + View
Brassica oleracea BolC6t36574H C6 + View
Brassica oleracea BolC3t17079H C3 - View
Brassica rapa BraA03t13108Z A03 - View
Brassica rapa BraA01t03872Z A01 + View
Brassica rapa BraA05t20805Z A05 - View
Camellia sinensis var. sinensis CSS0000436 hypothetical protein VITISV_004513 [Vitis vinifera] Chr2 - View
Cicer arietinum L. Ca_01109_v3 Ca_LG1_v3 - View
Carpinus fangiana Cfa002058 Cfa01 - View
Cardamine hirsuta CARHR042500 Coatomer subunit beta'-2 Chr1 + View
Cardamine hirsuta CARHR074490 Coatomer subunit beta'-1 Chr2 - View
Cardamine hirsuta CARHR091110 Coatomer subunit beta'-3 Chr3 - View
Carya illinoinensis CiPaw.02G151700 KOG0265//KOG0286 - U5 snRNP-specific protein-like factor and related proteins // G-protein beta subunit Chr02 + View
Citrullus lanatus ClCG07G012990 Coatomer beta subunit, putative CG_Chr07 - View
Citrullus lanatus ClCG09G002200 Coatomer beta subunit, putative CG_Chr09 + View
Cucumis melo MELO3C012954.2 Coatomer subunit beta' chr04 - View
Cucumis melo MELO3C024225.2 Coatomer subunit beta' chr01 - View
Chenopodium quinoa AUR62016439 At1g52360: Coatomer subunit beta'-2 C_Quinoa_Scaffold_3514 - View
Chenopodium quinoa AUR62011624 At1g52360: Coatomer subunit beta'-2 C_Quinoa_Scaffold_3333 - View
Capsella rubella Carub.0002s2752 K17302 - coatomer, subunit beta' (COPB2, SEC27) scaffold_2 - View
Capsella rubella Carub.0003s1571 K17302 - coatomer, subunit beta' (COPB2, SEC27) scaffold_3 - View
Capsella rubella Carub.0001s4136 K17302 - coatomer, subunit beta' (COPB2, SEC27) scaffold_1 + View
Cucumis sativus L. CsaV3_7G033100 Coatomer subunit beta' chr7 - View
Cucumis sativus L. CsaV3_3G026240 Coatomer subunit beta' chr3 + View
Daucus carota DCAR_007555 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_026311 hypothetical protein DCARv2_Chr7 - View
Durio zibethinus Duzib192G0572 NW_019168037.1 - View
Erigeron canadensis ECA247G1000 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA234G4381 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.J02997 Chr10 + View
Erythranthe guttata Migut.D01036 scaffold_4 + View
Erythranthe guttata Migut.I00859 scaffold_9 - View
Eutrema salsugineum Thhalv10020009m.g scaffold_13 + View
Fragaria x ananassa FAN09G0485 K17302 - coatomer, subunit beta' (COPB2, SEC27) Fvb6-2 + View
Fragaria x ananassa FAN02G0089 K17302 - coatomer, subunit beta' (COPB2, SEC27) Fvb6-4 - View
Gossypium hirsutum Gohir.D09G083400 K17302 - coatomer, subunit beta' (COPB2, SEC27) D09 + View
Gossypium hirsutum Gohir.D05G128650 K17302 - coatomer, subunit beta' (COPB2, SEC27) D05 - View
Gossypium hirsutum Gohir.A09G083400 K17302 - coatomer, subunit beta' (COPB2, SEC27) A09 + View
Gossypium hirsutum Gohir.A05G127983 K17302 - coatomer, subunit beta' (COPB2, SEC27) A05 - View
Gossypium hirsutum Gohir.A02G122100 PTHR19876//PTHR19876:SF6 - COATOMER // COATOMER SUBUNIT BETA'-1 A02 + View
Glycine max Glyma.13G360100 K17302 - coatomer, subunit beta' (COPB2, SEC27) Gm13 - View
Glycine max Glyma.15G013800 K17302 - coatomer, subunit beta' (COPB2, SEC27) Gm15 - View
Glycine max Glyma.08G207300 K17302 - coatomer, subunit beta' (COPB2, SEC27) Gm08 + View
Gossypium raimondii Gorai.006G099000 Chr06 + View
Gossypium raimondii Gorai.009G132800 Chr09 - View
Lupinus albus Lalb_Chr22g0351211 K17302 - coatomer, subunit beta' (COPB2, SEC27) Lalb_Chr22 - View
Lupinus albus Lalb_Chr04g0262611 K17302 - coatomer, subunit beta' (COPB2, SEC27) Lalb_Chr04 + View
Lupinus albus Lalb_Chr01g0012581 K17302 - coatomer, subunit beta' (COPB2, SEC27) Lalb_Chr01 + View
Lupinus albus Lalb_Chr14g0373461 PTHR19876:SF6 - COATOMER SUBUNIT BETA'-1 Lalb_Chr14 + View
Lotus japonicus Lj3g0002969 K17302 - coatomer, subunit beta' (COPB2, SEC27) chr3 + View
Lonicera japonica Lj5C61G9 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_1_34861 K17302 - coatomer, subunit beta' (COPB2, SEC27) Lsat_1_v8_lg_1 - View
Malus domestica MD15G1188300 Coatomer Chr15 + View
Malus domestica MD17G1196600 Coatomer Chr17 + View
Petunia axillaris Peaxi162Scf00207g00922 Coatomer, beta' subunit Peaxi162Scf00207 - View
Punica granatum PGR102G1395 NC_045129.1 - View
Populus trichocarpa Potri.003G056300 K17302 - coatomer, subunit beta' (COPB2, SEC27) Chr03 + View
Phaseolus vulgaris Phvul.010G151200 K17302 - coatomer, subunit beta' (COPB2, SEC27) Chr10 + View
Rhododendron simsii Rhsim12G0197300 chr12 - View
Rhododendron simsii Rhsim08G0220500 chr08 - View
Simmondsia chinensis Sc12g0009250 GWHAASQ00000012 + View
Sechium edule Sed0002090 LG05 - View
Sechium edule Sed0009223 LG07 + View
Schrenkiella parvula Sp3g14330 K17302 - coatomer, subunit beta' (COPB2, SEC27) ch3-1 - View
Schrenkiella parvula Sp1g38970 K17302 - coatomer, subunit beta' (COPB2, SEC27) ch1-2 + View
Schrenkiella parvula Sp5g35770 K17302 - coatomer, subunit beta' (COPB2, SEC27) ch5-7 + View
Selenicereus undatus Hund06605 Scaffold_33676 - View
Selenicereus undatus Hund00606 Scaffold_33678 - View
Trifolium pratense TPR.G37296 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI75G0804 NC_052253.1 + View
Tripterygium wilfordii TWI18G0225 NC_052241.1 - View
Vaccinium macrocarpon vmacro18920 Similar to At1g52360: Coatomer subunit beta'-2 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0451 CM024078.1 - View
Vigna mungo VMungo1080G0964 CM024079.1 - View