Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold7G03874 scaffold7 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G3730 LG-6 + View
Aethionema arabicum Aa31LG9G9600 LG-9 + View
Acer truncatum Atru.chr10.2159 chr10 + View
Acer truncatum Atru.chr6.3166 chr6 + View
Actinidia chinensis Actinidia05530 Lachesis_group20 - View
Arabidopsis lyrata AL6G48400 scaffold_6 - View
Arabidopsis lyrata AL7G32180 scaffold_7 - View
Avicennia marina MSTRG.14645 ScioBoG_18782_HRSCAF_18867 - View
Avicennia marina MSTRG.7234 ScioBoG_102840_HRSCAF_103099 - View
Avicennia marina MSTRG.15971 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.13155 ScioBoG_17730_HRSCAF_17811 - View
Amaranthus hybridus Ah.14g088110 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (HD-ZIP protein PDF2) (Homeodomain transcription factor PDF2) AmaHy_arrow1_Scaffold_14 - View
Arabidopsis thaliana AT4G21750 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost%2C epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2%2C another L1-specific gene%2C suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT4G04890 protodermal factor 2 Encodes a homeodomain protein that is expressed in the LI layer of the vegetative%2C floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 2 (PDF2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC09g51206 ChrC09 - View
Brassica carinata BcaB01g01844 ChrB01 - View
Brassica carinata BcaB01g02567 ChrB01 + View
Brassica carinata BcaNung02243 Contig816 + View
Brassica carinata BcaC04g21336 ChrC04 - View
Brassica napus A03p30220 A03 - View
Brassica napus C03p83710 C03 + View
Brassica napus A01p13080 A01 + View
Brassica napus A03p52920 A03 + View
Brassica napus C09p33030 C09 + View
Brassica napus C03p36470 C03 - View
Brassica napus A09p26030 A09 + View
Brassica napus C07p51370 C07 + View
Brassica napus C01p15780 C01 + View
Brassica oleracea BolC3t15960H C3 - View
Brassica oleracea BolC3t20651H C3 + View
Brassica oleracea BolC9t56138H C9 + View
Brassica oleracea BolC1t01530H C1 + View
Brassica oleracea BolC7t45636H C7 + View
Brassica rapa BraA01t01251Z A01 + View
Brassica rapa BraA09t38169Z A09 + View
Brassica rapa BraA03t14368Z A03 + View
Camellia sinensis var. sinensis CSS0004146 PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] Chr8 - View
Cannabis sativa CANSAT64G0261 NC_044379.1 - View
Corylus avellana Haze_09636 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) 4 + View
Citrus clementina Ciclev10014424m.g scaffold_2 - View
Citrus clementina Ciclev10014373m.g scaffold_2 + View
Ceratophyllum demersum CDE05G0529 3 - View
Ceratophyllum demersum CDE05G1122 3 + View
Carpinus fangiana Cfa020398 Cfa08 - View
Carpinus fangiana Cfa000261 Cfa01 - View
Cardamine hirsuta CARHR252660 Homeobox-leucine zipper protein family Chr8 + View
Cardamine hirsuta CARHR228490 Homeobox-leucine zipper protein family Chr7 + View
Carya illinoinensis CiPaw.12G127600 PTHR24326:SF239 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 Chr12 + View
Carya illinoinensis CiPaw.10G068800 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr10 + View
Citrullus lanatus ClCG01G022120 Homeobox-leucine zipper family protein CG_Chr01 - View
Citrullus lanatus ClCG03G004930 Homeobox-leucine zipper family protein CG_Chr03 - View
Cucumis melo MELO3C007377.2 Homeobox-leucine zipper family protein chr08 + View
Cucumis melo MELO3C002477.2 Homeobox-leucine zipper family protein chr12 + View
Carica papaya Cpa.g.sc198.17 supercontig_198 + View
Capsella rubella Carub.0006s3281 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_6 - View
Capsella rubella Carub.0007s1965 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_7 - View
Cucumis sativus L. CsaV3_1G010990 Homeobox-leucine zipper protein like chr1 - View
Cucumis sativus L. CsaV3_6G049180 Homeobox-leucine zipper protein like chr6 - View
Davidia involucrata Dinv20026 GWHABJS00000020 + View
Davidia involucrata Dinv17824 GWHABJS00000016 + View
Durio zibethinus Duzib160G0785 NW_019168015.1 + View
Durio zibethinus Duzib192G0772 NW_019168037.1 - View
Durio zibethinus Duzib235G0755 NW_019167982.1 + View
Erigeron canadensis ECA236G4342 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA248G0627 Conyza_canadensis_scaffold:9 - View
Erythranthe guttata Migut.M01293 scaffold_13 + View
Erythranthe guttata Migut.H01557 scaffold_8 + View
Eutrema salsugineum Thhalv10024488m.g K09338 - homeobox-leucine zipper protein (HD-ZIP) scaffold_1 - View
Eutrema salsugineum Thhalv10028459m.g PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_3 + View
Fragaria x ananassa FAN21G1266 KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain Fvb3-2 + View
Fragaria x ananassa FAN25G0553 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Fvb3-1 + View
Fragaria vesca FvH4_3g02520 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain Fvb3 - View
Fragaria vesca FvH4_6g43300 K09338 - homeobox-leucine zipper protein (HD-ZIP) Fvb6 - View
Gossypium hirsutum Gohir.D06G152400 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain D06 + View
Gossypium hirsutum Gohir.A10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED A10 - View
Gossypium hirsutum Gohir.D10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED D10 - View
Gossypium raimondii Gorai.011G016200 Chr11 - View
Lonicera japonica Lj2A272T64 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_7_17180 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Lsat_1_v8_lg_7 - View
Manihot esculenta Manes.15G074900 Chromosome15 - View
Manihot esculenta Manes.16G011100 Chromosome16 - View
Punica granatum PGR042G1066 NC_045130.1 + View
Prunus persica Prupe.4G024800 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Pp04 - View
Populus trichocarpa Potri.004G020400 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Chr04 - View
Quercus lobata QL08p033382 8 - View
Rosa chinensis RcHm_v2.0_Chr5g0003831 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0156800 chr13 - View
Rhododendron simsii Rhsim02G0111100 chr02 - View
Salvia bowleyana SalBow8G4303 GWHASIU00000004 - View
Simmondsia chinensis Sc17g0007180 GWHAASQ00000017 + View
Sechium edule Sed0026681 LG01 + View
Sechium edule Sed0025655 LG14 - View
Sechium edule Sed0009495 LG04 + View
Sechium edule Sed0014068 LG10 - View
Solanum lycopersicum Solyc02g080260.4 Woolly SL4.0ch02 + View
Schrenkiella parvula Sp7g19920 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED ch7-4 + View
Schrenkiella parvula Sp6g04070 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED ch6-1 + View
Solanum pennellii Sopen02g024970 Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. | protodermal factor 2 (PDF2) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development | LOCATED IN: nucleus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Homeobox, conserved site , Homeobox , Homeodomain-like , Lipid-binding START , Homeodomain-related | BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Spenn-ch02 + View
Solanum tuberosum PGSC0003DMG400002076 Homeobox protein ST4.03ch02 + View
Selenicereus undatus Hund23498 Scaffold_3410 - View
Tarenaya hassleriana THA.LOC104812923 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 NW_010960187.1 + View
Tripterygium wilfordii TWI63G1340 NC_052240.1 - View
Tripterygium wilfordii TWI38G1965 NC_052252.1 - View
Utricularia gibba unitig_37.g12148 unitig_37 + View
Vaccinium macrocarpon vmacro15824 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro03700 Similar to ATML1: Homeobox-leucine zipper protein MERISTEM L1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vanilla planifolia HPP92_011133 Homeobox leucine zipper protein *** CM028154.1 + View
Vitis vinifera GSVIVG01012643001 chr10 + View
Zea mays Zm00001eb431350 Zm00001e041695 Homeodomain leucine zipper family IV protein%3B Putative homeobox/lipid-binding domain family protein 10 - View