Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold60G20852 scaffold60 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia31654 Lachesis_group22 - View
Actinidia chinensis Actinidia07772 Lachesis_group21 + View
Arabidopsis lyrata AL8G25380 scaffold_8 + View
Avicennia marina MSTRG.8395 ScioBoG_102841_HRSCAF_103114 + View
Avicennia marina MSTRG.27234 ScioBoG_8578_HRSCAF_8617 - View
Arabidopsis thaliana AT5G51120 polyadenylate-binding protein 1 Encodes a homolog of the protein PABN1%2C a polyadenylation factor subunit. polyadenylate-binding protein 1 (PABN1)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). polyadenylate-binding protein 1 (PABN1)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1). Chr5 + View
Cannabis sativa CANSAT56G1687 NC_044371.1 + View
Corylus avellana Haze_22229 Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702) 3 - View
Ceratophyllum demersum CDE04G3670 2 - View
Carya illinoinensis CiPaw.07G182700 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr07 + View
Carya illinoinensis CiPaw.08G042900 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr08 - View
Citrullus lanatus ClCG07G017210 Polyadenylate-binding protein, putative CG_Chr07 - View
Corchorus olitorius COL.COLO4_37303 hypothetical protein AWUE01023877.1 + View
Carica papaya Cpa.g.sc13.217 supercontig_13 + View
Cucumis sativus L. CsaV3_4G004410 Polyadenylate-binding 2 chr4 - View
Daucus carota DCAR_014649 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv21888 GWHABJS00000004 - View
Durio zibethinus Duzib084G0961 NW_019167827.1 + View
Durio zibethinus Duzib205G1574 NW_019168381.1 + View
Erigeron canadensis ECA233G4573 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.A02940 Chr01 - View
Erythranthe guttata Migut.F00545 scaffold_6 - View
Erythranthe guttata Migut.F01213 scaffold_6 - View
Eutrema salsugineum Thhalv10014588m.g K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) scaffold_2 - View
Fragaria x ananassa FAN03G1271 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb7-3 - View
Fragaria x ananassa FAN06G0092 PTHR24012:SF436 - PABPN1 PROTEIN Fvb7-2 + View
Fragaria x ananassa FAN01G3060 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb7-4 - View
Fragaria x ananassa FAN10G2134 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb7-1 + View
Fragaria vesca FvH4_7g26520 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Fvb7 + View
Gossypium hirsutum Gohir.A12G195600 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) A12 + View
Gossypium hirsutum Gohir.A07G044900 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) A07 - View
Gossypium hirsutum Gohir.A03G061300 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) A03 - View
Gossypium hirsutum Gohir.D12G198400 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) D12 + View
Gossypium hirsutum Gohir.D03G104700 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) D03 + View
Gossypium raimondii Gorai.001G052500 Chr01 - View
Gossypium raimondii Gorai.003G110600 Chr03 + View
Gossypium raimondii Gorai.008G213100 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0502F.1_g167970 Hma1.2p1_0502F.1 - View
Lonicera japonica Lj1A972T41 GWHAAZE00000001 - View
Lonicera japonica Lj8A49G36 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_8_11560 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_9_58420 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI04_g13861_MAGBIO AED:0.35 Chr04 - View
Malus domestica MD07G1240900 RNA-binding (RRM/RBD/RNP motifs) family protein Chr07 + View
Malus domestica MD01G1174000 RNA-binding (RRM/RBD/RNP motifs) family protein Chr01 + View
Manihot esculenta Manes.14G041500 Chromosome14 - View
Manihot esculenta Manes.06G129500 Chromosome06 + View
Nicotiana tabacum Nitab4.5_0000103g0190 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000103 + View
Petunia axillaris Peaxi162Scf00073g01825 polyadenylate-binding protein 1 Peaxi162Scf00073 - View
Punica granatum PGR042G0768 NC_045130.1 - View
Prunus persica Prupe.2G269600 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Pp02 + View
Populus trichocarpa Potri.012G115100 K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2) Chr12 + View
Quercus lobata QL09p027326 9 + View
Rosa chinensis RcHm_v2.0_Chr1g0373171 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim09G0188200 chr09 + View
Rhododendron simsii Rhsim03G0156100 chr03 - View
Salvia bowleyana SalBow3G3849 GWHASIU00000006 - View
Salix brachista Sabra12G0082600 GWHAAZH00000012 + View
Sechium edule Sed0012421 LG13 - View
Solanum lycopersicum Solyc03g094040.4 Polyadenylate-binding protein 1 (AHRD V3.3 *** A0A2U1NYE9_ARTAN) SL4.0ch03 - View
Solanum pennellii Sopen03g024930 Encodes a homolog of the protein PABN1, a polyadenylation factor subunit. | polyadenylate-binding protein 1 (PABN1) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch03 - View
Trochodendron aralioides TAR629G1498 group0 - View
Trochodendron aralioides TAR636G1484 group1 - View
Theobroma cacao Thecc.03G145000 RNA-binding family protein Chromosome_3 + View
Tripterygium wilfordii TWI39G0945 NC_052250.1 - View
Utricularia gibba unitig_52.g17774 unitig_52 - View
Vaccinium macrocarpon vmacro09933 Similar to PABN1: Polyadenylate-binding protein 1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro06854 Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View