Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold172G39046 scaffold172 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1304 chr5 - View
Avicennia marina MSTRG.17427 ScioBoG_19834_HRSCAF_19925 - View
Avicennia marina MSTRG.21593 ScioBoG_26769_HRSCAF_26899 + View
Avicennia marina MSTRG.18202 ScioBoG_22153_HRSCAF_22259 - View
Amaranthus hybridus Ah.08g212780 AmaHy_arrow1_Scaffold_8 + View
Camellia sinensis var. sinensis CSS0046944 PREDICTED: histone H2AX [Malus domestica] Chr11 + View
Coffea canephora Cc01_g20020 Histone H2AX chr1 + View
Citrus clementina Ciclev10023264m.g scaffold_3 + View
Citrullus lanatus ClCG09G006630 Histone H2A CG_Chr09 - View
Cucumis melo MELO3C015882.2 Histone H2A chr01 + View
Carica papaya Cpa.g.sc9.144 supercontig_9 + View
Daucus carota DCAR_002780 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_012438 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv11282 GWHABJS00000007 - View
Durio zibethinus Duzib133G0383 NW_019167938.1 - View
Erythranthe guttata Migut.D00241 scaffold_4 - View
Fragaria x ananassa FAN20G3036 K11251 - histone H2A (H2A) Fvb2-3 - View
Fragaria x ananassa FAN15G2878 K11251 - histone H2A (H2A) Fvb2-4 + View
Fragaria vesca FvH4_2g24430 K11251 - histone H2A (H2A) Fvb2 + View
Gossypium hirsutum Gohir.D08G054100 K11251 - histone H2A (H2A) D08 + View
Gossypium hirsutum Gohir.A08G044400 K11251 - histone H2A (H2A) A08 + View
Gossypium hirsutum Gohir.A11G266600 KOG1756 - Histone 2A A11 - View
Gossypium hirsutum Gohir.D11G276900 K11251 - histone H2A (H2A) D11 - View
Gossypium hirsutum Gohir.A08G071500 K11251 - histone H2A (H2A) A08 + View
Gossypium raimondii Gorai.007G299000 Chr07 - View
Lonicera japonica Lj1C40T17 GWHAAZE00000001 - View
Malus domestica MD03G1273800 gamma histone variant H2AX Chr03 + View
Malus domestica MD11G1296200 gamma histone variant H2AX Chr11 + View
Manihot esculenta Manes.05G070200 Chromosome05 - View
Olea europaea Oeu047478.1 chr20 + View
Petunia axillaris Peaxi162Scf01039g00230 histone H2A 2 Peaxi162Scf01039 - View
Punica granatum PGR119G1523 NC_045132.1 - View
Prunus persica Prupe.8G250000 K11251 - histone H2A (H2A) Pp08 + View
Quercus lobata QL03p021686 3 + View
Rosa chinensis RcHm_v2.0_Chr6g0292261 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim13G0018900 chr13 - View
Salvia bowleyana SalBow3G4333 GWHASIU00000006 + View
Sechium edule Sed0014993 LG07 + View
Sechium edule Sed0027772 LG09 + View
Solanum lycopersicum Solyc06g084430.4 Histone H2A (AHRD V3.3 *-* A0A2G2WMP9_CAPBA) SL4.0ch06 + View
Solanum lycopersicum Solyc09g074300.1 Histone H2A (AHRD V3.3 *** A0A1U8GAC7_CAPAN) SL4.0ch09 + View
Solanum pennellii Sopen06g035820 Probable histone H2AXb - Oryza sativa (Rice), Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (, #947, -H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse, #947, -H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no, #947, -H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of, #947, -H2AX to a maximum of 50 diffuse foci. The level of, #947, H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10ñ20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | H2AXA | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX Spenn-ch06 + View
Solanum pennellii Sopen09g029130 Histone H2AX - Cicer arietinum (Chickpea) (Garbanzo), Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (, #947, -H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse, #947, -H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no, #947, -H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of, #947, -H2AX to a maximum of 50 diffuse foci. The level of, #947, H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10ñ20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | H2AXA | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX Spenn-ch09 + View
Tripterygium wilfordii TWI23G1047 NC_052239.1 - View
Utricularia gibba unitig_26.g10159 unitig_26 + View
Vaccinium macrocarpon vmacro02521 Similar to HIS2A: Histone H2AX (Cicer arietinum OX%3D3827) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01011034001 chr7 + View