Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold198G41082 scaffold198 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G13730 LG-2 - View
Aethionema arabicum Aa31LG6G480 LG-6 + View
Actinidia chinensis Actinidia09176 Lachesis_group13 + View
Arabidopsis lyrata AL7G36840 scaffold_7 - View
Avicennia marina MSTRG.13747 ScioBoG_18778_HRSCAF_18863 + View
Avicennia marina MSTRG.24842 ScioBoG_4119_HRSCAF_4138 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.50YMIU K08488 - syntaxin 7 (STX7) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BB0AZK K08488 - syntaxin 7 (STX7) arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT1G32270 syntaxin member of SYP2 Gene Family ATSYP24%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C t-SNARE (InterPro:IPR010989)%2C Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1)%3B Has 1336 Blast hits to 1336 proteins in 217 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 416%3B Fungi - 220%3B Plants - 605%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT4G17730 syntaxin of plants 23 member of SYP2 Gene Family syntaxin of plants 23 (SYP23)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: intracellular protein transport%2C cellular membrane fusion%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C t-SNARE (InterPro:IPR010989)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%2C Syntaxin%2C N-terminal (InterPro:IPR006011)%3B BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). syntaxin of plants 23 (SYP23)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: intracellular protein transport%2C cellular membrane fusion%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C t-SNARE (InterPro:IPR010989)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%2C Syntaxin%2C N-terminal (InterPro:IPR006011)%3B BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1)%3B Has 1783 Blast hits to 1783 proteins in 244 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 845%3B Fungi - 276%3B Plants - 461%3B Viruses - 0%3B Other Eukaryotes - 195 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC05g27268 ChrC05 + View
Brassica napus A09p33870 A09 - View
Brassica oleracea BolC5t31899H C5 + View
Brassica rapa BraA09t38935Z A09 - View
Beta vulgaris EL10Ac5g12039 K08488 - syntaxin 7 (STX7) Chr5_EL10_PGA_scaffold2 + View
Coffea canephora Cc08_g03240 Syntaxin-22 chr8 - View
Carpinus fangiana Cfa012489 Cfa05 - View
Cardamine hirsuta CARHR031650 Syntaxin-like protein Chr1 + View
Carya illinoinensis CiPaw.11G097000 K08488 - syntaxin 7 (STX7) Chr11 - View
Citrullus lanatus ClCG10G001400 Syntaxin CG_Chr10 + View
Cucumis melo MELO3C013834.2 syntaxin-22 chr06 + View
Chenopodium quinoa AUR62018664 SYP22: Syntaxin-22 C_Quinoa_Scaffold_1817 + View
Chenopodium quinoa AUR62007336 SYP22: Syntaxin-22 C_Quinoa_Scaffold_1971 - View
Cucumis sativus L. CsaV3_3G001490 syntaxin-22 chr3 + View
Daucus carota DCAR_004284 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_008241 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv28987 GWHABJS00000003 - View
Davidia involucrata Dinv25244 GWHABJS00000017 - View
Durio zibethinus Duzib084G1382 NW_019167827.1 + View
Durio zibethinus Duzib205G0779 NW_019168381.1 + View
Durio zibethinus Duzib068G0655 NW_019167838.1 + View
Erigeron canadensis ECA233G3270 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.E00245 Chr05 + View
Eutrema salsugineum Thhalv10008473m.g PF05739//PF14523 - SNARE domain (SNARE) // Syntaxin-like protein (Syntaxin_2) scaffold_5 - View
Eutrema salsugineum Thhalv10025956m.g PF00804//PF05739//PF14523 - Syntaxin (Syntaxin) // SNARE domain (SNARE) // Syntaxin-like protein (Syntaxin_2) scaffold_1 - View
Fragaria vesca FvH4_5g22860 K08488 - syntaxin 7 (STX7) Fvb5 - View
Gossypium hirsutum Gohir.D12G209300 K08488 - syntaxin 7 (STX7) D12 + View
Gossypium hirsutum Gohir.A12G206800 K08488 - syntaxin 7 (STX7) A12 + View
Gossypium hirsutum Gohir.D03G174675 K08488 - syntaxin 7 (STX7) D03 - View
Gossypium hirsutum Gohir.D08G175200 K08488 - syntaxin 7 (STX7) D08 + View
Gossypium hirsutum Gohir.A08G154700 K08488 - syntaxin 7 (STX7) A08 + View
Glycine max Glyma.09G206800 K08488 - syntaxin 7 (STX7) Gm09 - View
Glycine max Glyma.01G015600 K08488 - syntaxin 7 (STX7) Gm01 + View
Gossypium raimondii Gorai.003G184100 Chr03 - View
Gossypium raimondii Gorai.004G183100 Chr04 + View
Lupinus albus Lalb_Chr16g0381171 K08488 - syntaxin 7 (STX7) Lalb_Chr16 + View
Lupinus albus Lalb_Chr09g0325571 K08488 - syntaxin 7 (STX7) Lalb_Chr09 + View
Lotus japonicus Lj2g0003265 PTHR19957//PTHR19957:SF120 - SYNTAXIN // SUBFAMILY NOT NAMED chr2 + View
Lonicera japonica Lj2A234G44 GWHAAZE00000002 + View
Punica granatum PGR031G2235 NC_045127.1 + View
Punica granatum PGR042G2654 NC_045130.1 + View
Prunus persica Prupe.5G030000 K08488 - syntaxin 7 (STX7) Pp05 + View
Populus trichocarpa Potri.003G095300 K08488 - syntaxin 7 (STX7) Chr03 - View
Populus trichocarpa Potri.001G138500 K08488 - syntaxin 7 (STX7) Chr01 + View
Phaseolus vulgaris Phvul.002G138200 K08488 - syntaxin 7 (STX7) Chr02 + View
Rhododendron simsii Rhsim11G0019500 chr11 - View
Salix brachista Sabra01G0107400 GWHAAZH00000001 + View
Sechium edule Sed0021549 LG04 - View
Solanum lycopersicum Solyc08g076540.3 Syntaxin (AHRD V3.3 *** A0A2G3DCS8_CAPCH) SL4.0ch08 + View
Solanum lycopersicum Solyc08g005200.3 Syntaxin (AHRD V3.3 *** A0A2G3BQD2_CAPCH) SL4.0ch08 - View
Schrenkiella parvula Sp1g27970 K08488 - syntaxin 7 (STX7) ch1-1 + View
Schrenkiella parvula Sp7g16380 K08488 - syntaxin 7 (STX7) ch7-4 - View
Solanum pennellii Sopen08g025120 Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164ñ220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. | VACUOLAR MORPHOLOGY 3 (VAM3) | FUNCTIONS IN: SNAP receptor activity | INVOLVED IN: in 7 processes | LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain , t-SNARE , Syntaxin/epimorphin, conserved site , Syntaxin, N-terminal | BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 Spenn-ch08 + View
Solanum pennellii Sopen08g001220 Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164ñ220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. | VACUOLAR MORPHOLOGY 3 (VAM3) | FUNCTIONS IN: SNAP receptor activity | INVOLVED IN: in 7 processes | LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain , t-SNARE , Syntaxin/epimorphin, conserved site , Syntaxin, N-terminal | BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 Spenn-ch08 - View
Solanum tuberosum PGSC0003DMG400014799 Syntaxin ST4.03ch08 + View
Solanum tuberosum PGSC0003DMG400017837 Syntaxin ST4.03ch08 + View
Trochodendron aralioides TAR374G0504 group12 + View
Theobroma cacao Thecc.03G307600 Syntaxin/t-SNARE family protein Chromosome_3 - View
Tarenaya hassleriana THA.LOC104798485 syntaxin-22 NW_010968045.1 - View
Tripterygium wilfordii TWI60G0286 NC_052246.1 - View
Vaccinium macrocarpon vmacro00303 Similar to SYP22: Syntaxin-22 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G0833 CM024074.1 + View
Vitis vinifera GSVIVG01013100001 chr2 - View