Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold58G20528 scaffold58 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G14830 LG-7 + View
Aethionema arabicum Aa31LG8G13650 LG-8 + View
Aethionema arabicum Aa31LG6G16000 LG-6 + View
Acer truncatum Atru.chr5.3071 chr5 + View
Acer truncatum Atru.BG.67.p chr5 - View
Actinidia chinensis Actinidia00528 Lachesis_group12 - View
Actinidia chinensis Actinidia27893 Lachesis_group16 + View
Actinidia chinensis Actinidia17815 Lachesis_group7 + View
Arabidopsis lyrata AL4G10860 scaffold_4 - View
Arabidopsis lyrata AL7G11250 scaffold_7 - View
Avicennia marina MSTRG.20080 ScioBoG_26180_HRSCAF_26306 - View
Avicennia marina MSTRG.27697 ScioBoG_94932_HRSCAF_95134 - View
Avicennia marina MSTRG.5400 ScioBoG_102838_HRSCAF_103081 + View
Amaranthus hybridus Ah.01g019370 Glycine-rich RNA-binding protein blt801 (Low temperature-responsive RNA-binding protein) AmaHy_arrow1_Scaffold_1 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.05X33F PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T0DAJU PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TCQK5L PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SN2AIN PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT4G39260 cold, circadian rhythm, and RNA binding 1 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). cold%2C circadian rhythm%2C and RNA binding 1 (CCR1)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: response to zinc ion%2C response to salt stress%2C response to cold%2C circadian rhythm%2C innate immune response%3B LOCATED IN: nucleolus%2C cell wall%2C peroxisome%2C plasma membrane%2C chloroplast%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: cold%2C circadian rhythm%2C and rna binding 2 (TAIR:AT2G21660.2)%3B Has 126 Blast hits to 126 proteins in 35 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 0%3B Fungi - 21%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT2G21660 cold, circadian rhythm, and rna binding 2 Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions%2C but%2C promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). cold%2C circadian rhythm%2C and rna binding 2 (CCR2)%3B FUNCTIONS IN: double-stranded DNA binding%2C RNA binding%2C single-stranded DNA binding%3B INVOLVED IN: in 12 processes%3B LOCATED IN: nucleus%2C chloroplast%2C peroxisome%2C cytoplasm%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: cold%2C circadian rhythm%2C and RNA binding 1 (TAIR:AT4G39260.3)%3B Has 548 Blast hits to 547 proteins in 63 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 92%3B Fungi - 0%3B Plants - 453%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaC06g36135 ChrC06 + View
Brassica carinata BcaC07g41125 ChrC07 + View
Brassica carinata BcaB03g12255 ChrB03 - View
Brassica carinata BcaC02g08775 ChrC02 + View
Brassica carinata BcaNung01272 Contig480 + View
Brassica napus C01p00420 C01 - View
Brassica napus C03p77730 C03 - View
Brassica napus A01p00300 A01 - View
Brassica napus A09p58040 A09 + View
Brassica napus C08p41250 C08 + View
Brassica napus A08p23710 A08 + View
Brassica napus C07p07420 C07 - View
Brassica oleracea BolC1t00047H C1 - View
Brassica oleracea BolC7t41158H C7 - View
Brassica oleracea BolC8t51691H C8 + View
Brassica oleracea BolC3t20031H C3 - View
Brassica rapa BraA01t00037Z A01 - View
Brassica rapa BraA09t41192Z A09 + View
Brassica rapa BraA07t28248Z A07 - View
Brassica rapa BraA08t34323Z A08 + View
Beta vulgaris EL10Ac9g21721 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0035708 unnamed protein product [Vitis vinifera] Chr4 - View
Camellia sinensis var. sinensis CSS0018150 PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera] Chr3 - View
Capsicum annuum CAN.G1412.11 PGAv.1.6.scaffold1412 + View
Cicer arietinum L. Ca_15365_v3 Ca_LG5_v3 - View
Cicer arietinum L. Ca_20878_v3 Ca_LG6_v3 + View
Coffea canephora Cc02_g17520 Hypothetical protein chr2 - View
Carpinus fangiana Cfa004992 Cfa02 - View
Cardamine hirsuta CARHR247430 RNA-binding protein Chr7 + View
Cardamine hirsuta CARHR106480 RNA-binding protein Chr3 + View
Cardamine hirsuta CARHR112650 RNA-binding protein Chr4 - View
Carya illinoinensis CiPaw.06G135000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr06 - View
Carya illinoinensis CiPaw.05G065000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr05 + View
Citrullus lanatus ClCG11G004420 Glycine-rich RNA-binding protein, putative CG_Chr11 - View
Carica papaya Cpa.g.sc62.156 supercontig_62 + View
Chenopodium quinoa AUR62016740 Glycine-rich RNA-binding protein GRP1A C_Quinoa_Scaffold_3670 + View
Chenopodium quinoa AUR62011314 33 kDa ribonucleoprotein, chloroplastic C_Quinoa_Scaffold_3333 - View
Capsella rubella Carub.0007s0118 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) scaffold_7 - View
Capsella rubella Carub.0004s0071 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) scaffold_4 - View
Cucumis sativus L. CsaV3_2G014690 Glycine-rich RNA binding protein chr2 + View
Daucus carota DCAR_001576 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_003671 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv42062 GWHABJS00000002 + View
Davidia involucrata Dinv23516 GWHABJS00000005 - View
Durio zibethinus Duzib052G0372 NW_019167849.1 + View
Durio zibethinus Duzib132G1167 NW_019167915.1 - View
Erigeron canadensis ECA236G3345 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA234G1717 Conyza_canadensis_scaffold:4 + View
Erythranthe guttata Migut.B00230 scaffold_2 - View
Erythranthe guttata Migut.N01242 scaffold_14 + View
Eutrema salsugineum Thhalv10000386m.g PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A scaffold_15 - View
Gossypium hirsutum Gohir.D12G028500 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) D12 + View
Gossypium hirsutum Gohir.A12G029000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A12 + View
Gossypium hirsutum Gohir.A03G194700 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A03 + View
Gossypium hirsutum Gohir.D02G215900 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) D02 + View
Gossypium hirsutum Gohir.A13G034000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A13 - View
Gossypium hirsutum Gohir.D13G032300 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) D13 - View
Glycine max Glyma.04G012700 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Gm04 - View
Glycine max Glyma.06G012600 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Gm06 - View
Glycine max Glyma.12G043000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Gm12 - View
Glycine max Glyma.11G117300 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Gm11 - View
Gossypium raimondii Gorai.005G243900 Chr05 + View
Gossypium raimondii Gorai.013G036800 Chr13 - View
Gossypium raimondii Gorai.008G029100 Chr08 + View
Helianthus annuus HanXRQChr16g0505631 Putative nucleotide-binding alpha-beta plait domain HanXRQChr16 - View
Hydrangea macrophylla Hma1.2p1_0066F.1_g036360 Hma1.2p1_0066F.1 - View
Lupinus albus Lalb_Chr01g0002531 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Lalb_Chr01 - View
Lupinus albus Lalb_Chr03g0025651 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Lalb_Chr03 - View
Lotus japonicus Lj3g0007386 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) chr3 - View
Lonicera japonica Lj5C196T12 GWHAAZE00000005 - View
Lonicera japonica Lj9A370T40 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_5_119120 K13195 - cold-inducible RNA-binding protein (CIRBP) Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_7_91261 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Lsat_1_v8_lg_7 + View
Malus domestica MD10G1075500 cold Chr10 - View
Manihot esculenta Manes.17G101400 Chromosome17 + View
Nelumbo nucifera Nn5g29616 chr5 + View
Nicotiana tabacum Nitab4.5_0000308g0150 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain Nitab4.5_0000308 + View
Olea europaea Oeu020749.1 chr5 - View
Petunia axillaris Peaxi162Scf00016g00739 Glycine-rich RNA-binding protein Peaxi162Scf00016 - View
Petunia axillaris Peaxi162Scf00684g00327 Glycine-rich RNA-binding protein Peaxi162Scf00684 - View
Petunia axillaris Peaxi162Scf00003g01226 glycine-rich RNA-binding protein 2 Peaxi162Scf00003 - View
Punica granatum PGR042G2290 NC_045130.1 - View
Prunus persica Prupe.8G096400 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Pp08 - View
Populus trichocarpa Potri.004G155300 K13195 - cold-inducible RNA-binding protein (CIRBP) Chr04 + View
Populus trichocarpa Potri.009G116400 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr09 + View
Phaseolus vulgaris Phvul.009G023700 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr09 - View
Phaseolus vulgaris Phvul.011G045000 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr11 - View
Quercus lobata QL11p043964 11 + View
Rhododendron simsii Rhsim11G0177800 chr11 + View
Rhododendron simsii Rhsim05G0074000 chr05 - View
Salvia bowleyana SalBow6G3505 GWHASIU00000002 - View
Salvia bowleyana SalBow3G4446 GWHASIU00000006 - View
Salix brachista Sabra09G0089400 GWHAAZH00000009 + View
Salix brachista Sabra04G0103000 GWHAAZH00000004 + View
Simmondsia chinensis Sc08g0000520 GWHAASQ00000008 + View
Simmondsia chinensis Sc18g0004440 GWHAASQ00000018 - View
Sechium edule Sed0012011 LG05 - View
Sechium edule Sed0018809 LG01 - View
Solanum lycopersicum Solyc01g109660.2 meloidogyne-induced giant cell protein DB275 SL4.0ch01 + View
Schrenkiella parvula Sp4g00820 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) ch4-1 - View
Schrenkiella parvula Sp3g29450 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) ch3-5 + View
Schrenkiella parvula Sp7g36580 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) ch7-6 + View
Solanum pennellii Sopen10g023060 Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta), Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). | GLYCINE RICH PROTEIN 7 (ATGRP7) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding | INVOLVED IN: in 12 processes | LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 Spenn-ch10 + View
Solanum pennellii Sopen01g051850 Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta), Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). | GLYCINE RICH PROTEIN 7 (ATGRP7) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding | INVOLVED IN: in 12 processes | LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400000708 Glycine-rich RNA binding protein ST4.03ch01 + View
Solanum tuberosum PGSC0003DMG400033902 RNA-binding gricine-rich protein-1c ST4.03ch10 + View
Selenicereus undatus Hund00262 Scaffold_33678 - View
Selenicereus undatus Hund06236 Scaffold_33676 + View
Trochodendron aralioides TAR381G0905 group11 + View
Trochodendron aralioides TAR628G0585 group5 + View
Theobroma cacao Thecc.02G084800 Glycine-rich RNA-binding protein 7 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104819608 glycine-rich RNA-binding protein GRP2A-like NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104824824 glycine-rich RNA-binding protein GRP1A-like NW_010966933.1 - View
Tarenaya hassleriana THA.LOC104807734 glycine-rich RNA-binding protein GRP1A-like NW_010963495.1 + View
Tarenaya hassleriana THA.LOC104807840 glycine-rich RNA-binding protein GRP1A-like NW_010963495.1 - View
Tripterygium wilfordii TWI31G0254 NC_052233.1 - View
Tripterygium wilfordii TWI75G1009 NC_052253.1 - View
Vaccinium macrocarpon vmacro17489 Similar to Glycine-rich RNA-binding protein (Daucus carota OX%3D4039) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02100 Similar to blt801: Glycine-rich RNA-binding protein blt801 (Hordeum vulgare OX%3D4513) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G0622 CM024076.1 - View
Vitis vinifera GSVIVG01031973001 chr3 + View