Gene: Carub.0007s0118

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0007s0118
  • Transcript Identifier Carub.0007s0118.1
  • Gene Type Coding gene
  • Location scaffold_7 : 419723-420481 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0007s0118.v1.1
  • pacid 39231894

Descriptions

  • Description PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G39260
GO:0010043
ISO
PLAZA Integrative Orthologyresponse to zinc ion AT4G39260
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT4G39260
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT4G39260
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT4G39260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G39260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT4G39260
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G39260
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G39260
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT4G39260
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G39260
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G39260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated