Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr13.792 chr13 + View
Actinidia chinensis Actinidia38091 Lachesis_group7 + View
Actinidia chinensis Actinidia27977 Lachesis_group16 - View
Actinidia chinensis Actinidia08263 Lachesis_group27 + View
Actinidia chinensis Actinidia10177 Lachesis_group26 + View
Actinidia chinensis Actinidia22673 Lachesis_group28 + View
Arabidopsis lyrata AL8G17560 scaffold_8 - View
Avicennia marina MSTRG.1045 ScioBoG_102833_HRSCAF_103052 - View
Avicennia marina MSTRG.25051 ScioBoG_4119_HRSCAF_4138 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U2M1WG KOG2049 - Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GVX85Y PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F07HS6 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.18UVCA PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED arahy.Tifrunner.gnm1.Arahy.09 - View
Arabidopsis thaliana AT5G43090 pumilio 13 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 13 (PUM13)%3B FUNCTIONS IN: RNA binding%2C binding%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 14 (TAIR:AT5G43110.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC06g31726 ChrC06 - View
Camellia sinensis var. sinensis CSS0000542 unnamed protein product [Coffea canephora] Chr3 - View
Camellia sinensis var. sinensis CSS0003984 PREDICTED: putative pumilio homolog 8, chloroplastic [Vitis vinifera] Chr4 + View
Cicer arietinum L. Ca_15920_v3 Ca_LG5_v3 - View
Corylus avellana Haze_10207 Similar to APUM8: Putative pumilio homolog 8, chloroplastic (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc02_g19490 RNA binding protein, putative chr2 + View
Coffea canephora Cc10_g05450 Putative Predicted protein chr10 + View
Citrus clementina Ciclev10003448m.g scaffold_5 + View
Citrus clementina Ciclev10030389m.g scaffold_8 - View
Carpinus fangiana Cfa004612 Cfa02 + View
Cardamine hirsuta CARHR180890 pumilio 13 Chr6 - View
Carya illinoinensis CiPaw.06G167900 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Chr06 - View
Carya illinoinensis CiPaw.05G013800 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Chr05 + View
Citrullus lanatus ClCG02G006590 Pumilio family protein CG_Chr02 + View
Cucumis melo MELO3C028587.2 Pumilio-like protein chr01 - View
Corchorus olitorius COL.COLO4_32563 hypothetical protein AWUE01021134.1 - View
Carica papaya Cpa.g.sc292.5 supercontig_292 + View
Carica papaya Cpa.g.sc21.125 supercontig_21 - View
Capsella rubella Carub.0008s0562 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED scaffold_8 - View
Cucumis sativus L. CsaV3_7G008000 pumilio homolog 12 chr7 + View
Daucus carota DCAR_021975 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_012806 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv15778 GWHABJS00000005 + View
Davidia involucrata Dinv44990 GWHABJS00000002 - View
Durio zibethinus Duzib248G0767 NW_019168048.1 - View
Durio zibethinus Duzib093G1564 NW_019167937.1 - View
Durio zibethinus Duzib116G0180 NW_019167949.1 + View
Durio zibethinus Duzib132G0546 NW_019167915.1 + View
Durio zibethinus Duzib041G0326 NW_019167826.1 + View
Erigeron canadensis ECA232G4608 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA247G1041 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA240G0455 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.F02271 Chr06 + View
Erythranthe guttata Migut.C00510 scaffold_3 - View
Erythranthe guttata Migut.B00407 scaffold_2 + View
Fragaria x ananassa FAN27G1461 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Fvb2-1 - View
Fragaria x ananassa FAN20G3020 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Fvb2-3 + View
Fragaria x ananassa FAN24G1937 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Fvb2-2 + View
Fragaria x ananassa FAN15G1299 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Fvb2-4 - View
Fragaria vesca FvH4_2g33440 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Fvb2 - View
Gossypium hirsutum Gohir.A04G119200 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED A04 - View
Gossypium hirsutum Gohir.D04G160833 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED D04 - View
Gossypium hirsutum Gohir.A03G185100 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED A03 - View
Gossypium hirsutum Gohir.D05G210700 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED D05 + View
Glycine max Glyma.10G260000 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Gm10 - View
Glycine max Glyma.06G044300 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Gm06 + View
Gossypium raimondii Gorai.009G217200 Chr09 + View
Gossypium raimondii Gorai.005G234000 Chr05 - View
Gossypium raimondii Gorai.012G148700 Chr12 - View
Hydrangea macrophylla Hma1.2p1_0210F.1_g089690 Hma1.2p1_0210F.1 - View
Lupinus albus Lalb_Chr02g0145191 KOG2049 - Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) Lalb_Chr02 - View
Lotus japonicus Lj1g0014869 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED chr1 - View
Lonicera japonica Lj5A216T103 GWHAAZE00000005 + View
Lonicera japonica Lj4A67G48 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_1_23401 Lsat_1_v8_lg_1 + View
Lactuca sativa Lsat_1_v5_gn_9_112000 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Lsat_1_v8_lg_9 + View
Malus domestica MD08G1089500 pumilio 7 Chr08 - View
Malus domestica MD05G1093500 pumilio 12 Chr05 + View
Malus domestica MD15G1074100 pumilio 7 Chr15 - View
Manihot esculenta Manes.18G043600 Chromosome18 + View
Medicago truncatula Medtr1g106975 pumilio-family RNA-binding repeatprotein chr1 - View
Medicago truncatula Medtr3g102650 pumilio-family RNA-binding repeatprotein chr3 + View
Nelumbo nucifera Nn5g30475 chr5 + View
Petunia axillaris Peaxi162Scf00152g00328 pumilio 8 Peaxi162Scf00152 + View
Punica granatum PGR031G3698 NC_045127.1 + View
Punica granatum PGR083G1906 NC_045133.1 + View
Prunus persica Prupe.8G138200 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Pp08 + View
Prunus persica Prupe.1G426900 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Pp01 - View
Populus trichocarpa Potri.002G120900 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Chr02 - View
Populus trichocarpa Potri.014G020300 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Chr14 - View
Populus trichocarpa Potri.001G298000 PTHR12537//PTHR12537:SF63 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 14-RELATED Chr01 - View
Phaseolus vulgaris Phvul.002G052900 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Chr02 - View
Phaseolus vulgaris Phvul.007G042200 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Chr07 + View
Phaseolus vulgaris Phvul.009G069800 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED Chr09 + View
Quercus lobata QL11p032388 11 - View
Rosa chinensis RcHm_v2.0_Chr6g0309091 RcHm_v2.0_Chr6 + View
Rosa chinensis RcHm_v2.0_Chr6g0254321 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim05G0089100 chr05 - View
Rhododendron simsii Rhsim11G0156100 chr11 + View
Rhododendron simsii Rhsim07G0222300 chr07 - View
Rhododendron simsii Rhsim06G0058800 chr06 + View
Salvia bowleyana SalBow6G3931 GWHASIU00000002 + View
Salvia bowleyana SalBow7G3497 GWHASIU00000005 + View
Salix brachista Sabra16G0186900 GWHAAZH00000016 - View
Salix brachista Sabra14G0013300 GWHAAZH00000014 - View
Simmondsia chinensis Sc02g0007690 GWHAASQ00000002 + View
Sechium edule Sed0016511 LG10 + View
Solanum lycopersicum Solyc04g078210.3 Armadillo-type fold protein (AHRD V3.3 *** A0A2U1PNX9_ARTAN) SL4.0ch04 - View
Schrenkiella parvula Sp2g07870 PTHR12537:SF63 - PUMILIO HOMOLOG 14-RELATED ch2-4 + View
Solanum pennellii Sopen04g031830 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 12 (PUM12) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 7 Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400021538 RNA binding protein ST4.03ch04 - View
Trochodendron aralioides TAR628G0495 group5 - View
Theobroma cacao Thecc.02G112100 Pumilio domain-containing protein C6G9.14 Chromosome_2 + View
Theobroma cacao Thecc.08G093400 Pumilio domain-containing protein C4G8.03c Chromosome_8 - View
Trifolium pratense TPR.G27123 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI31G1047 NC_052233.1 - View
Vaccinium macrocarpon vmacro19457 Similar to APUM12: Pumilio homolog 12 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro21461 Similar to APUM8: Putative pumilio homolog 8, chloroplastic (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro04581 Similar to APUM8: Putative pumilio homolog 8, chloroplastic (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G0082 CM024071.1 - View
Vigna mungo VMungo1215G1563 CM024074.1 + View
Vitis vinifera GSVIVG01009386001 chr18 - View