Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold13G06680 scaffold13 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G4800 LG-3 - View
Acer truncatum Atru.chr8.1415 chr8 - View
Actinidia chinensis Actinidia07917 Lachesis_group0 - View
Arabidopsis lyrata AL3G23000 scaffold_3 + View
Arabidopsis lyrata AL6G16270 scaffold_6 + View
Avicennia marina MSTRG.26618 ScioBoG_52287_HRSCAF_52434 - View
Avicennia marina MSTRG.19290 ScioBoG_25048_HRSCAF_25167 + View
Amaranthus hybridus Ah.08g210240 AmaHy_arrow1_Scaffold_8 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XSR2AY PF13041 - PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.02 + View
Arabidopsis thaliana AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein Encodes a DYW PPR protein that is involved in editing the mitochondrial NAD2 transcript at the site nad2-842. Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1)%3B Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 61%3B Fungi - 80%3B Plants - 37599%3B Viruses - 0%3B Other Eukaryotes - 568 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0772G122 AmTr_v1.0_scaffold00030 + View
Brassica napus A05p37880 A05 - View
Beta vulgaris EL10Ac7g16824 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0015032 40S ribosomal protein s17 [Camellia sinensis] Chr4 - View
Capsicum annuum CAN.G574.43 PGAv.1.6.scaffold574 + View
Cannabis sativa CANSAT64G2536 NC_044379.1 + View
Cicer arietinum L. Ca_09034_v3 Ca_LG3_v3 + View
Corylus avellana Haze_20143 Similar to PCMP-E63: Pentatricopeptide repeat-containing protein At1g53600, mitochondrial (Arabidopsis thaliana OX%3D3702) 10 + View
Corylus avellana Haze_19665 Similar to PCMP-E37: Putative pentatricopeptide repeat-containing protein At5g37570 (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g06730 Putative Pentatricopeptide repeat-containing protein At4g39530 chr6 - View
Citrus clementina Ciclev10013058m.g scaffold_6 - View
Ceratophyllum demersum CDE06G2333 4 + View
Carpinus fangiana Cfa016656 Cfa07 + View
Carpinus fangiana Cfa020054 Cfa08 - View
Cardamine hirsuta CARHR086020 Pentatricopeptide repeat-containing protein Chr3 + View
Citrullus lanatus ClCG10G018590 40S ribosomal protein S17, putative CG_Chr10 - View
Cucumis melo MELO3C009509.2 40S ribosomal protein S17-like chr04 - View
Carica papaya Cpa.g.sc104.73 supercontig_104 - View
Chenopodium quinoa AUR62034184 RPS17D: 40S ribosomal protein S17-4 C_Quinoa_Scaffold_2123 - View
Chenopodium quinoa AUR62001546 PCMP-H52: Putative pentatricopeptide repeat-containing protein At3g11460 C_Quinoa_Scaffold_2716 + View
Chenopodium quinoa AUR62006304 PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065 C_Quinoa_Scaffold_1001 + View
Chenopodium quinoa AUR62006261 RPS17: 40S ribosomal protein S17 C_Quinoa_Scaffold_1001 + View
Capsella rubella Carub.0003s1078 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_3 + View
Daucus carota DCAR_020728 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_013425 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv21144 GWHABJS00000021 - View
Durio zibethinus Duzib168G0372 NW_019168159.1 - View
Erigeron canadensis ECA238G2703 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.A02621 Chr01 - View
Erythranthe guttata Migut.J00675 scaffold_10 + View
Erythranthe guttata Migut.D02351 scaffold_4 + View
Erythranthe guttata Migut.L01807 scaffold_12 + View
Eutrema salsugineum Thhalv10014973m.g PTHR10732//PTHR10732:SF2 - 40S RIBOSOMAL PROTEIN S17 // SUBFAMILY NOT NAMED scaffold_2 + View
Eutrema salsugineum Thhalv10022435m.g PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_13 - View
Fragaria x ananassa FAN02G2867 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Fvb6-4 + View
Fragaria x ananassa FAN14G4125 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Fvb6-1 - View
Fragaria x ananassa FAN05G3866 PF01535 - PPR repeat (PPR) Fvb6-3 - View
Fragaria x ananassa FAN09G2685 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Fvb6-2 - View
Fragaria vesca FvH4_6g19660 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6 + View
Gossypium hirsutum Gohir.A01G196600 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A01 + View
Gossypium hirsutum Gohir.A01G204100 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) A01 - View
Gossypium hirsutum Gohir.D01G193600 PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) D01 - View
Glycine max Glyma.02G200300 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Gm02 - View
Gossypium raimondii Gorai.002G237700 Chr02 - View
Helianthus annuus HanXRQChr02g0053351 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr02 - View
Lupinus albus Lalb_Chr02g0154831 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr02 - View
Lupinus albus Lalb_Chr25g0288131 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Lalb_Chr25 - View
Lotus japonicus Lj1g0021128 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) chr1 - View
Lotus japonicus Lj5g0003250 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) chr5 + View
Lactuca sativa Lsat_1_v5_gn_1_57661 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Lsat_1_v8_lg_1 - View
Magnolia biondii MBI11_g01738_MAGBIO AED:0.05 Chr11 + View
Malus domestica MD12G1032900 Ribosomal S17 family protein Chr12 + View
Malus domestica MD14G1033700 Ribosomal S17 family protein Chr14 + View
Malus domestica MD14G1026500 Tetratricopeptide repeat (TPR)-like superfamily protein Chr14 + View
Manihot esculenta Manes.08G030400 Chromosome08 + View
Manihot esculenta Manes.09G049700 Chromosome09 - View
Medicago truncatula Medtr1g058250 40S ribosomal protein S17 chr1 - View
Nelumbo nucifera Nn6g34779 chr6 - View
Nicotiana tabacum Nitab4.5_0000020g0450 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0000020 + View
Oryza sativa ssp. japonica Os04g0414800 Pentatricopeptide repeat domain containing protein. chr04 + View
Prunus persica Prupe.7G099300 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Pp07 - View
Prunus persica Prupe.7G103500 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp07 - View
Pisum sativum Psat3g030720 PPR repeat family chr3LG5 - View
Papaver somniferum PSO339G3736 NC_039366.1 - View
Papaver somniferum PSO384G1813 NC_039368.1 + View
Populus trichocarpa Potri.016G073750 PTHR10732//PTHR10732:SF2 - 40S RIBOSOMAL PROTEIN S17 // SUBFAMILY NOT NAMED Chr16 + View
Populus trichocarpa Potri.006G207500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr06 - View
Quercus lobata QL01p020116 1 + View
Quercus lobata QL07p037634 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0475001 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim03G0068700 chr03 - View
Salix brachista Sabra06G0159700 GWHAAZH00000006 - View
Solanum lycopersicum Solyc01g006920.4 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2XTB6_CAPBA) SL4.0ch01 + View
Solanum lycopersicum Solyc10g150146.1 40S ribosomal protein S17 (AHRD V3.3 *** Q6RJY3_CAPAN) SL4.0ch10 - View
Solanum pennellii Sopen01g003390 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch01 + View
Solanum pennellii Sopen01g039950 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch01 - View
Solanum pennellii Sopen01g002910 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch01 + View
Solanum pennellii Sopen10g032640 Ribosomal S17 family protein | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: ribosome, intracellular | EXPRESSED IN: male gametophyte, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e , Ribosomal protein S17e, conserved site | BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400000240 Pentatricopeptide repeat-containing protein ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400028243 40S ribosomal protein S17 ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400021367 Pentatricopeptide repeat-containing protein ST4.03ch01 + View
Trochodendron aralioides TAR633G0434 group2 - View
Trochodendron aralioides TAR369G1096 group18 + View
Theobroma cacao Thecc.05G097200 Pentatricopeptide repeat superfamily protein Chromosome_5 + View
Tarenaya hassleriana THA.LOC104816607 40S ribosomal protein S17-4-like NW_010965775.1 + View
Tripterygium wilfordii TWI74G0923 NC_052234.1 + View
Tripterygium wilfordii TWI77G0472 NC_052236.1 - View
Tripterygium wilfordii TWI53G0411 NC_052244.1 - View
Vitis vinifera GSVIVG01033920001 chr8 - View
Zea mays Zm00001eb083670 Zm00001e008183 Putative pentatricopeptide repeat-containing protein 2 - View