Gene: AT3G11460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11460
  • Transcript Identifier AT3G11460.1
  • Gene Type Coding gene
  • Location Chr3 : 3608250-3610121 : positive

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11460.1
  • Alias MEF10,mitochondrial RNA editing factor 10
  • uniprot Q9CAY1

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 61; Fungi - 80; Plants - 37599; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016554
IMP
Gene Ontologycytidine to uridine editing1
GO:0009451
IBA
Gene OntologyRNA modification2
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0003723
IBA
Gene OntologyRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
ISM
Gene Ontologymitochondrion3
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR032867 DYW domain
Mapman id Description
16.11.3.3.4.8 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF10)